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64_003_scaffold_56

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Displaying items 1-30 of 64 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_003_scaffold_56_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(213..716)
DNA (504bp) protein (168aa)
Universal stress family protein n=2 Tax=Staphylococcus RepID=H3W082_STAEP
Universal stress family protein {ECO:0000313|EMBL:EFE59836.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
universal stress protein
64_003_scaffold_56_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

861..1976
DNA (1116bp) protein (372aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Alanine dehydrogenase n=50 Tax=Staphylococcus epidermidis RepID=DHA_STAEQ
64_003_scaffold_56_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2040..3095)
DNA (1056bp) protein (352aa)
pepQ; proline dipeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Creatinase {ECO:0000313|EMBL:EFE59838.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EFE59838.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized peptidase SERP1271 n=45 Tax=Staphylococcus epidermidis RepID=Y1271_STAEQ
64_003_scaffold_56_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3267..3956
DNA (690bp) protein (230aa)
UPF0173 metal-dependent hydrolase SERP1270 n=48 Tax=Staphylococcus epidermidis RepID=Y1270_STAEQ
metal-dependent hydrolase
UPF0173 metal-dependent hydrolase SE_1382 {ECO:0000255|HAMAP-Rule:MF_00457}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
64_003_scaffold_56_5

Not on your lists

comp(4257..4670)
DNA (414bp) protein (138aa)
Universal stress protein family n=49 Tax=Staphylococcus epidermidis RepID=Q5HNJ9_STAEQ
universal stress protein
Universal stress family protein {ECO:0000313|EMBL:ETJ18947.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
64_003_scaffold_56_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4868..6166
DNA (1299bp) protein (433aa)
CBS domain protein n=47 Tax=Staphylococcus epidermidis RepID=Q5HNK0_STAEQ
hypothetical protein
CBS domain protein {ECO:0000313|EMBL:AAW54656.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_56_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6200..7138
DNA (939bp) protein (313aa)
Uncharacterized protein n=29 Tax=Staphylococcus epidermidis RepID=Q8CS65_STAES
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein
DHHA1 domain protein {ECO:0000313|EMBL:EFE59842.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_56_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7162..10359
DNA (3198bp) protein (1066aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit n=7 Tax=Staphylococcus epidermidis RepID=H3VHE1_STAEP
64_003_scaffold_56_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10663..11892
DNA (1230bp) protein (410aa)
Malic enzyme, NAD binding domain protein {ECO:0000313|EMBL:EFE59844.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EFE59844.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
Malic enzyme, NAD binding domain protein n=22 Tax=Staphylococcus epidermidis RepID=D4FIC5_STAEP
64_003_scaffold_56_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11991..12848
DNA (858bp) protein (286aa)
acetyl-CoA carboxylase subunit beta (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=61 Tax=Staphylococcus epidermidis RepID=ACCD_STAES
64_003_scaffold_56_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12848..13792
DNA (945bp) protein (315aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=23 Tax=Staphylococcus epidermidis RepID=ACCA_STAES
64_003_scaffold_56_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13970..14938
DNA (969bp) protein (323aa)
ATP-dependent 6-phosphofructokinase {ECO:0000255|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000255|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000255|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000255|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000255|HAMAP-Rule:MF_00339}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
pfkA; 6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11]
6-phosphofructokinase n=42 Tax=Staphylococcaceae RepID=K6PF_STAES
64_003_scaffold_56_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14962..16719
DNA (1758bp) protein (586aa)
Pyruvate kinase; Short=PK;; EC=2.7.1.40;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
pyk; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=48 Tax=Staphylococcus epidermidis RepID=KPYK_STAEQ
64_003_scaffold_56_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17100..18458)
DNA (1359bp) protein (453aa)
D-serine/D-alanine/glycine transporter n=38 Tax=Staphylococcus epidermidis RepID=Q8CNX2_STAES
D-serine/D-alanine/glycine transporter; K03293 amino acid transporter, AAT family
Amino acid permease {ECO:0000313|EMBL:EFE59849.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_56_15
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18806..19927
DNA (1122bp) protein (374aa)
gltA; citrate synthase (EC:2.3.3.5); K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=39 Tax=Staphylococcus epidermidis RepID=Q5HNL0_STAEQ
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
64_003_scaffold_56_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19970..21238
DNA (1269bp) protein (423aa)
isocitrate dehydrogenase (EC:1.1.1.41); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP]; Short=IDH;; EC=1.1.1.42;; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Isocitrate dehydrogenase [NADP] n=42 Tax=Staphylococcus epidermidis RepID=IDH_STAEQ
64_003_scaffold_56_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21554..22264
DNA (711bp) protein (237aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=76 Tax=Staphylococcus epidermidis RepID=Q5HNL2_STAEQ
alkaline phosphatase synthesis transcriptional regulatory protein; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AAW54628.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_56_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22264..23961
DNA (1698bp) protein (566aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
alkaline phosphatase synthesis sensor protein; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Alkaline phosphatase synthesis sensor protein n=36 Tax=Staphylococcus epidermidis RepID=Q8CNX6_STAES
64_003_scaffold_56_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24175..26886
DNA (2712bp) protein (904aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Staphylococcus epidermidis (strain ATCC 12228) RepID=Q8CNX7_STAES
DNA polymerase I {ECO:0000313|EMBL:ESV20854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
64_003_scaffold_56_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26902..27774
DNA (873bp) protein (291aa)
fpg; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Formamidopyrimidine-DNA glycosylase n=53 Tax=Staphylococcus RepID=Q5HNL5_STAEQ
64_003_scaffold_56_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27790..28401
DNA (612bp) protein (204aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Dephospho-CoA kinase n=57 Tax=Staphylococcus epidermidis RepID=COAE_STAEQ
64_003_scaffold_56_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28756..28872
DNA (117bp) protein (39aa)
Uncharacterized protein n=31 Tax=Staphylococcus epidermidis RepID=Q8CS71_STAES
hypothetical protein
IS1272, transposase {ECO:0000313|EMBL:EES35865.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
64_003_scaffold_56_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29245..30270
DNA (1026bp) protein (342aa)
glyceraldehyde 3-phosphate dehydrogenase 2; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase 2; Short=GAPDH 2;; EC=1.2.1.12;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Glyceraldehyde-3-phosphate dehydrogenase 2 n=20 Tax=Staphylococcus epidermidis RepID=G3P2_STAES
64_003_scaffold_56_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30790..31260
DNA (471bp) protein (157aa)
Transcriptional repressor NrdR n=75 Tax=Staphylococcus epidermidis RepID=NRDR_STAEQ
nrdR; NrdR family transcriptional regulator; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
64_003_scaffold_56_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31261..32631
DNA (1371bp) protein (457aa)
Replication initiation and membrane attachment protein n=38 Tax=Staphylococcus epidermidis RepID=Q5HNL9_STAEQ
replication initiation and membrane attachment protein; K03346 replication initiation and membrane attachment protein
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EFE59859.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_56_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32631..33551
DNA (921bp) protein (307aa)
Primosomal protein DnaI n=46 Tax=Staphylococcus epidermidis RepID=Q5HNM0_STAEQ
dnaI; primosomal protein DnaI; K11144 primosomal protein DnaI
Primosomal protein DnaI {ECO:0000313|EMBL:AAW54612.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_56_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33904..35841
DNA (1938bp) protein (646aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=26 Tax=Staphylococcus epidermidis RepID=SYT_STAES
64_003_scaffold_56_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36270..37772
DNA (1503bp) protein (501aa)
Amino acid permease family protein n=52 Tax=Staphylococcus epidermidis RepID=Q5HNM2_STAEQ
lysine-specific permease; K03293 amino acid transporter, AAT family
Amino acid permease family protein {ECO:0000313|EMBL:AAW54610.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_56_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

37980..38507
DNA (528bp) protein (176aa)
Translation initiation factor IF-3 n=81 Tax=Staphylococcus epidermidis RepID=IF3_STAEQ
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000255|HAMAP-Rule:MF_00080}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
64_003_scaffold_56_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


38535..38735
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=86 Tax=Staphylococcus RepID=RL35_STAEQ
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Displaying items 1-30 of 64 in total

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