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64_003_scaffold_154

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_003_scaffold_154_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(263..739)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=53 Tax=Staphylococcus epidermidis RepID=GREA_STAEQ
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_154_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(770..1393)
DNA (624bp) protein (208aa)
udk; uridine kinase (EC:2.7.1.48); K00876 uridine kinase [EC:2.7.1.48]
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uridine kinase n=51 Tax=Staphylococcus epidermidis RepID=URK_STAEQ
64_003_scaffold_154_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1393..2661)
DNA (1269bp) protein (423aa)
protease; K08303 putative protease [EC:3.4.-.-]
Peptidase, U32 family {ECO:0000313|EMBL:EFE59832.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFE59832.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Peptidase, U32 family n=48 Tax=Staphylococcus epidermidis RepID=Q5HNT8_STAEQ
64_003_scaffold_154_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2679..3602)
DNA (924bp) protein (308aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFE59831.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFE59831.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Peptidase, U32 family n=58 Tax=Staphylococcus epidermidis RepID=Q5HNT7_STAEQ
protease
64_003_scaffold_154_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3605..4240)
DNA (636bp) protein (212aa)
O-methyltransferase family protein n=57 Tax=Staphylococcus epidermidis RepID=Q5HNT6_STAEQ
O-methyltransferase
O-methyltransferase {ECO:0000313|EMBL:EFE59830.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_154_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4669..4977)
DNA (309bp) protein (103aa)
UPF0473 protein SERP1179 n=78 Tax=Staphylococcus epidermidis RepID=Y1179_STAEQ
hypothetical protein
UPF0473 protein HMPREF0794_0387 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_154_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4992..5420)
DNA (429bp) protein (143aa)
Holliday junction resolvase-like protein; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Putative Holliday junction resolvase n=52 Tax=Staphylococcus epidermidis RepID=RUVX_STAEQ
64_003_scaffold_154_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5422..5682)
DNA (261bp) protein (87aa)
UPF0297 protein SERP1181 n=80 Tax=Staphylococcus epidermidis RepID=Y1181_STAEQ
hypothetical protein
UPF0297 protein SERP1181 {ECO:0000255|HAMAP-Rule:MF_01507}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_154_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(5746..8376)
DNA (2631bp) protein (877aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=20 Tax=Staphylococcus epidermidis RepID=D4FIJ6_STAEP
64_003_scaffold_154_10
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8705..11137)
DNA (2433bp) protein (811aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
deoxyribonuclease; K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Helicase, RecD/TraA family n=31 Tax=Staphylococcus epidermidis RepID=D4FIJ5_STAEP
64_003_scaffold_154_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11139..11807)
DNA (669bp) protein (223aa)
TPR domain protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNT0_STAEQ
TPR domain-containing protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EFE59824.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_154_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11970..13088)
DNA (1119bp) protein (373aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00144};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
tRNA-specific 2-thiouridylase MnmA n=44 Tax=Staphylococcus epidermidis RepID=MNMA_STAEQ
64_003_scaffold_154_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13088..14230)
DNA (1143bp) protein (381aa)
aminotransferase class V; K04487 cysteine desulfurase [EC:2.8.1.7]
Aminotransferase, class V {ECO:0000313|EMBL:EFE59822.1}; EC=2.8.1.7 {ECO:0000313|EMBL:EFE59822.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Aminotransferase, class V n=46 Tax=Staphylococcus RepID=Q5HNS8_STAEQ
64_003_scaffold_154_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14473..15468
DNA (996bp) protein (332aa)
Bacterial luciferase family protein n=41 Tax=Staphylococcus epidermidis RepID=Q5HNS7_STAEQ
luciferase
Bacterial luciferase family protein {ECO:0000313|EMBL:AAW54560.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_154_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15668..15811)
DNA (144bp) protein (48aa)
Uncharacterized protein n=48 Tax=Staphylococcus epidermidis RepID=Q5HNS6_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54561.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_154_16
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15997..16419)
DNA (423bp) protein (141aa)
Rrf2 family protein n=53 Tax=Staphylococcus epidermidis RepID=Q5HNS5_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ13479.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
64_003_scaffold_154_17
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16505..17776
DNA (1272bp) protein (424aa)
ATPase, AAA family n=42 Tax=Staphylococcus epidermidis RepID=Q5HNS4_STAEQ
recombination factor protein RarA; K07478 putative ATPase
Uncharacterized protein {ECO:0000313|EMBL:ETJ13478.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
64_003_scaffold_154_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17970..18746)
DNA (777bp) protein (259aa)
Uncharacterized protein n=49 Tax=Staphylococcus epidermidis RepID=Q8CSA0_STAES
HesA/MoeB/ThiF family protein
ThiF family protein {ECO:0000313|EMBL:EFE59817.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_154_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(19360..21126)
DNA (1767bp) protein (589aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.12 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Aspartate--tRNA ligase n=40 Tax=Staphylococcus epidermidis RepID=SYD_STAEQ
64_003_scaffold_154_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(21129..22403)
DNA (1275bp) protein (425aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Histidine--tRNA ligase n=51 Tax=Staphylococcus epidermidis RepID=SYH_STAEQ
64_003_scaffold_154_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22775..23650)
DNA (876bp) protein (292aa)
Probable cell wall amidase lytH {ECO:0000256|PIRNR:PIRNR037730}; EC=3.5.1.- {ECO:0000256|PIRNR:PIRNR037730};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Probable cell wall amidase lytH n=31 Tax=Staphylococcus epidermidis RepID=C5Q9P3_STAEP
64_003_scaffold_154_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23647..24099)
DNA (453bp) protein (151aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-); K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
D-tyrosyl-tRNA(Tyr) deacylase n=57 Tax=Staphylococcus epidermidis RepID=DTD_STAEQ
64_003_scaffold_154_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24113..26302)
DNA (2190bp) protein (730aa)
GTP pyrophosphokinase; EC=2.7.6.5;; (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
relA-2; GTP pyrophosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
GTP diphosphokinase n=2 Tax=Staphylococcus epidermidis RepID=J0K8F3_STAEP
64_003_scaffold_154_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26823..27341)
DNA (519bp) protein (173aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Adenine phosphoribosyltransferase n=76 Tax=Staphylococcus epidermidis RepID=APT_STAEQ
64_003_scaffold_154_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27360..29633)
DNA (2274bp) protein (758aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EFE59810.1}; EC=3.1.-.- {ECO:0000313|EMBL:EFE59810.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=18 Tax=Staphylococcus epidermidis RepID=D4FII0_STAEP
Displaying 25 items

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