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64_008_scaffold_119

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Displaying items 1-30 of 95 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_119_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..295
DNA (294bp) protein (98aa)
Integration host factor subunit alpha n=13 Tax=Enterobacteriaceae RepID=L0M236_ENTBF
ihfA; integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_008_scaffold_119_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

449..1429
DNA (981bp) protein (327aa)
Vitamin B12 import system permease protein BtuC n=4 Tax=Citrobacter RepID=C1M3W3_9ENTR
Vitamin B12 import system permease protein BtuC {ECO:0000256|HAMAP-Rule:MF_01004, ECO:0000256|SAAS:SAAS00165801}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
vtamin B12-transporter permease
64_008_scaffold_119_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1490..2041
DNA (552bp) protein (184aa)
Glutathione peroxidase n=5 Tax=Citrobacter RepID=J0LTH7_9ENTR
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
btuE; glutathione peroxidase
64_008_scaffold_119_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2041..2790
DNA (750bp) protein (250aa)
vitamin B12-transporter ATPase (EC:3.6.3.33)
Vitamin B12-transporter ATPase n=4 Tax=Citrobacter RepID=J1FXK5_9ENTR
Vitamin B12 import ATP-binding protein BtuD {ECO:0000313|EMBL:ETX70685.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_008_scaffold_119_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2868..3332
DNA (465bp) protein (155aa)
Lipoprotein nlpC n=3 Tax=Citrobacter RepID=K8R7C8_CITFR
NlpC/P60 family protein {ECO:0000313|EMBL:KEL82240.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
endopeptidase
64_008_scaffold_119_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3649..4362
DNA (714bp) protein (238aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QVC1_CITFR
Uncharacterized protein {ECO:0000313|EMBL:ETX70687.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
cyclic di-GMP regulator CdgR
64_008_scaffold_119_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4424..5866
DNA (1443bp) protein (481aa)
UPF0061 protein WC1_01777 n=1 Tax=Citrobacter sp. KTE30 RepID=R8UUU9_9ENTR
UPF0061 protein TN42_06660 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
64_008_scaffold_119_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5863..6642)
DNA (780bp) protein (260aa)
Hemin import ATP-binding protein HmuV {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041330};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Hemin importer ATP-binding subunit n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R3B2_CITFR
hmuV; hemin importer ATP-binding subunit
64_008_scaffold_119_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6635..7627)
DNA (993bp) protein (331aa)
Transport system permease n=3 Tax=Citrobacter RepID=J1FXL0_9ENTR
Iron complex transport system permease {ECO:0000313|EMBL:ETX70690.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
iron ABC transporter
64_008_scaffold_119_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7627..8448)
DNA (822bp) protein (274aa)
ABC transporter periplasmic protein n=2 Tax=Citrobacter RepID=M3CMW0_CITFR
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:ETX70691.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hemin ABC transporter substrate-binding protein
64_008_scaffold_119_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8445..9476)
DNA (1032bp) protein (344aa)
Hemin-degrading family protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BNJ4_CITFR
Hemin transporter {ECO:0000313|EMBL:KJC12536.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hemin transporter
64_008_scaffold_119_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9524..11506)
DNA (1983bp) protein (661aa)
TonB-dependent heme/hemoglobin receptor family protein n=4 Tax=Citrobacter RepID=J1FXD6_9ENTR
Ligand-gated channel protein {ECO:0000313|EMBL:KJC12535.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ligand-gated channel protein
64_008_scaffold_119_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11581..11769)
DNA (189bp) protein (63aa)
Hemin uptake protein n=6 Tax=Citrobacter RepID=J0LTI9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KJC09256.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
64_008_scaffold_119_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11939..12985)
DNA (1047bp) protein (349aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=6 Tax=Citrobacter RepID=C1M3X5_9ENTR
phospho-2-dehydro-3-deoxyheptonate aldolase
64_008_scaffold_119_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13112..13945)
DNA (834bp) protein (278aa)
Phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Phosphoenolpyruvate synthase regulatory protein n=7 Tax=Enterobacteriaceae RepID=I6HIX7_SHIFL
PEP synthetase regulatory protein
64_008_scaffold_119_16
unknown

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14273..14398
DNA (126bp) protein (42aa)

This feature has no annotations

64_008_scaffold_119_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14605..16581
DNA (1977bp) protein (659aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=4 Tax=Citrobacter RepID=J0LZP4_9ENTR
64_008_scaffold_119_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16649..18286)
DNA (1638bp) protein (546aa)
Short-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KEL82224.1}; EC=6.2.1.- {ECO:0000313|EMBL:KEL82224.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Short-chain-fatty-acid-CoA ligase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UUW1_9ENTR
short chain acyl-CoA synthetase
64_008_scaffold_119_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18369..18662)
DNA (294bp) protein (98aa)
4Fe-4S ferredoxin n=3 Tax=Citrobacter RepID=K8R3A5_CITFR
Ferredoxin {ECO:0000313|EMBL:KJC12529.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ferredoxin
64_008_scaffold_119_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18659..19948)
DNA (1290bp) protein (430aa)
Putative flavoprotein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QYR4_CITFR
FAD binding domain protein {ECO:0000313|EMBL:KEL82222.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
oxidoreductase
64_008_scaffold_119_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20006..20941)
DNA (936bp) protein (312aa)
Electron transfer flavoprotein subunit YdiR n=2 Tax=Citrobacter RepID=K8R7B6_CITFR
Electron transfer flavodomain protein {ECO:0000313|EMBL:KEL82221.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
fixB; electron transfer flavoprotein
64_008_scaffold_119_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20963..21727)
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3BNK0_CITFR
Electron transfer flavodomain protein {ECO:0000313|EMBL:KEL82220.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
electron transfer flavoprotein
64_008_scaffold_119_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22202..23092
DNA (891bp) protein (297aa)
AraC family transcriptional regulator n=3 Tax=Citrobacter RepID=K8QX17_CITFR
AraC family transcriptional regulator {ECO:0000313|EMBL:KJC12525.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
AraC family transcriptional regulator
64_008_scaffold_119_24
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23147..24298)
DNA (1152bp) protein (384aa)
Acyl-CoA dehydrogenase n=4 Tax=Citrobacter RepID=K8R398_CITFR
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EOQ49553.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
acyl-CoA dehydrogenase
64_008_scaffold_119_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24312..25907)
DNA (1596bp) protein (532aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Acetate CoA-transferase YdiF n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DUT9_CITFR
hypothetical protein
64_008_scaffold_119_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26063..26821)
DNA (759bp) protein (253aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
3-dehydroquinate dehydratase n=3 Tax=Citrobacter RepID=K8R7B0_CITFR
3-dehydroquinate dehydratase
64_008_scaffold_119_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26858..27724)
DNA (867bp) protein (289aa)
Quinate/shikimate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01578}; EC=1.1.1.282 {ECO:0000256|HAMAP-Rule:MF_01578};; NAD-dependent shikimate 5-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01578}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
shikimate dehydrogenase (EC:1.1.1.282)
Quinate/shikimate dehydrogenase n=3 Tax=Citrobacter RepID=K8QVA2_CITFR
64_008_scaffold_119_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27746..28981)
DNA (1236bp) protein (412aa)
Inner membrane transporter ydiN n=2 Tax=Citrobacter RepID=R8UUX4_9ENTR
Transporter {ECO:0000313|EMBL:KJC12520.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
transporter
64_008_scaffold_119_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29223..30443)
DNA (1221bp) protein (407aa)
Inner membrane transporter ydiM n=1 Tax=Citrobacter sp. KTE30 RepID=R8UY70_9ENTR
Transporter {ECO:0000313|EMBL:KJC12519.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
transporter
64_008_scaffold_119_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30492..30848)
DNA (357bp) protein (119aa)
Cytoplasmic protein n=2 Tax=Citrobacter freundii RepID=K8QYQ5_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC12518.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
Displaying items 1-30 of 95 in total

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