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64_008_scaffold_246

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_246_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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325..1374
DNA (1050bp) protein (350aa)
Membrane-bound lytic murein transglycosylase A {ECO:0000256|PIRNR:PIRNR019422}; EC=4.2.2.n1 {ECO:0000256|PIRNR:PIRNR019422};; Murein hydrolase A {ECO:0000256|PIRNR:PIRNR019422}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
Membrane-bound lytic murein transglycosylase A n=4 Tax=Enterobacteriaceae RepID=I6HEM9_SHIFL
mltA; murein transglycosylase
64_008_scaffold_246_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1484..2290
DNA (807bp) protein (269aa)
Sulfur acceptor protein CsdL n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DKC2_CITFR
Sulfur acceptor protein CsdL {ECO:0000313|EMBL:KJC06910.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
sulfur acceptor protein CsdL
64_008_scaffold_246_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2368..2814)
DNA (447bp) protein (149aa)
Cysteine desulfurase, sulfur acceptor subunit CsdE {ECO:0000313|EMBL:KEL77983.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KEL77983.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
CsdA-binding activator n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CDJ3_CITFR
CsdA-binding activator
64_008_scaffold_246_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2814..4019)
DNA (1206bp) protein (402aa)
Cysteine sulfinate desulfinase n=2 Tax=Citrobacter RepID=K8QZ87_CITFR
Cysteine sulfinate desulfinase {ECO:0000313|EMBL:KJC12782.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
cysteine sulfinate desulfinase
64_008_scaffold_246_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4212..4439
DNA (228bp) protein (76aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QM70_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC12781.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
64_008_scaffold_246_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4745..5662
DNA (918bp) protein (306aa)
Glycine cleavage system transcriptional activator n=8 Tax=Citrobacter RepID=C1MAY8_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KJC12780.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
transcriptional regulator
64_008_scaffold_246_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5681..6076
DNA (396bp) protein (132aa)
UPF0382 inner membrane protein ygdD n=10 Tax=Citrobacter RepID=C1MAY7_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKC61862.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
64_008_scaffold_246_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6069..7169
DNA (1101bp) protein (367aa)
Ribosomal RNA large subunit methyltransferase M {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058276}; EC=2.1.1.186 {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058274};; 23S rRNA (cytidine2498-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01551}; 23S rRNA 2'-O-ribose methyltransferase RlmM {ECO:0000256|HAMAP-Rule:MF_01551}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
Ribosomal RNA large subunit methyltransferase M n=6 Tax=Citrobacter RepID=C1MAY6_9ENTR
23S rRNA methyltransferase
64_008_scaffold_246_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7205..7933)
DNA (729bp) protein (243aa)
L-fucose operon activator n=5 Tax=Citrobacter RepID=J0VRR0_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KJC06903.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
DNA-binding transcriptional activator FucR
64_008_scaffold_246_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7991..8413)
DNA (423bp) protein (141aa)
L-fucose mutarotase {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00010479}; EC=5.1.3.29 {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00148242};; Fucose 1-epimerase {ECO:0000256|HAMAP-Rule:MF_01662}; Type-2 mutarotase {ECO:0000256|HAMAP-Rule:MF_01662}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L-fucose mutarotase n=2 Tax=Citrobacter RepID=K8QM61_CITFR
hypothetical protein
64_008_scaffold_246_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8415..9833)
DNA (1419bp) protein (473aa)
L-fuculokinase {ECO:0000256|HAMAP-Rule:MF_00986}; EC=2.7.1.51 {ECO:0000256|HAMAP-Rule:MF_00986};; L-fuculose kinase {ECO:0000256|HAMAP-Rule:MF_00986}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L-fuculokinase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QPC8_CITFR
L-fuculose kinase
64_008_scaffold_246_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9956..11731)
DNA (1776bp) protein (592aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
fucI; sugar isomerase (EC:5.3.1.25)
L-fucose isomerase n=4 Tax=Citrobacter RepID=J1G2Y2_9ENTR
64_008_scaffold_246_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12196..13695
DNA (1500bp) protein (500aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Uncharacterized protein n=4 Tax=Citrobacter RepID=K8QQV0_CITFR
D-ribose transporter ATP-binding protein
64_008_scaffold_246_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13699..14682
DNA (984bp) protein (328aa)
Branched-chain amino acid transport system/permease component protein n=9 Tax=Enterobacteriaceae RepID=J0VRQ6_9ENTR
Ribose ABC transporter permease {ECO:0000313|EMBL:KJC06898.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ribose ABC transporter permease
64_008_scaffold_246_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14756..15706
DNA (951bp) protein (317aa)
D-ribose-binding periplasmic protein n=6 Tax=Citrobacter RepID=J1G336_9ENTR
LacI family transcriptional regulator {ECO:0000313|EMBL:KJC06897.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
LacI family transcriptional regulator
64_008_scaffold_246_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15760..17340
DNA (1581bp) protein (527aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=R8UL62_9ENTR
Sugar kinase {ECO:0000313|EMBL:KJC06896.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
sugar kinase
64_008_scaffold_246_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17407..18405
DNA (999bp) protein (333aa)
Periplasmic binding s and sugar binding domain of the LacI family protein n=6 Tax=Citrobacter RepID=J1G2X9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX68362.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
LacI family transcriptional regulator
64_008_scaffold_246_18
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18547..19194
DNA (648bp) protein (216aa)
fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; EC=4.1.2.17 {ECO:0000256|HAMAP-Rule:MF_00987};; L-fuculose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
L-fuculose phosphate aldolase n=7 Tax=Citrobacter RepID=J0M5F7_9ENTR
64_008_scaffold_246_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19222..20370
DNA (1149bp) protein (383aa)
L-1,2-propanediol oxidoreductase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BE82_CITFR
1,2-propanediol oxidoreductase {ECO:0000313|EMBL:KJC12767.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
1,2-propanediol oxidoreductase
64_008_scaffold_246_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20447..21202)
DNA (756bp) protein (252aa)
Flap endonuclease Xni {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00008260}; Short=FEN {ECO:0000256|HAMAP-Rule:MF_01192};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00273675};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Flap endonuclease Xni n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CX55_CITFR
flap endonuclease-like protein
64_008_scaffold_246_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21369..22736)
DNA (1368bp) protein (456aa)
L-serine dehydratase 2 n=5 Tax=Citrobacter RepID=C1MAX7_9ENTR
Serine dehydratase {ECO:0000313|EMBL:KJC12765.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
serine dehydratase
64_008_scaffold_246_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22790..24079)
DNA (1290bp) protein (430aa)
Serine transporter n=7 Tax=Citrobacter RepID=C1MAX6_9ENTR
Serine/threonine protein kinase {ECO:0000313|EMBL:KJC06890.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
serine/threonine protein kinase
64_008_scaffold_246_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24640..26004)
DNA (1365bp) protein (455aa)
LOG family protein ygdH n=6 Tax=Citrobacter RepID=G9S9P8_CITFR
LOG family protein ygdH {ECO:0000313|EMBL:ETX68356.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
LOG family protein
64_008_scaffold_246_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26117..26965)
DNA (849bp) protein (283aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=5 Tax=Citrobacter RepID=J0VRP6_9ENTR
queF; 7-cyano-7-deazaguanine reductase
64_008_scaffold_246_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27034..27579
DNA (546bp) protein (182aa)
Protein Syd n=2 Tax=Citrobacter RepID=K8QM41_CITFR
Protein Syd {ECO:0000256|HAMAP-Rule:MF_01104, ECO:0000256|SAAS:SAAS00064630}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
SecY interacting protein Syd
64_008_scaffold_246_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28211..28540
DNA (330bp) protein (110aa)
Cytoplasmic protein n=6 Tax=Citrobacter RepID=J0LYY6_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KEL77959.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
64_008_scaffold_246_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28540..29322
DNA (783bp) protein (261aa)
Pseudouridine synthase n=1 Tax=Citrobacter sp. KTE30 RepID=R8ULV0_9ENTR
RNA pseudouridylate synthase family protein {ECO:0000313|EMBL:KEL77958.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
tRNA pseudouridine synthase C
64_008_scaffold_246_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29342..29791
DNA (450bp) protein (150aa)
Flavodoxin n=2 Tax=Citrobacter RepID=M3BE90_CITFR
Hypothetical flavoprotein YqcA (Clustered with tRNA pseudouridine synthase C) {ECO:0000313|EMBL:CDL37783.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
flavodoxin
64_008_scaffold_246_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30134..31222
DNA (1089bp) protein (363aa)
D-galactonate transporter n=6 Tax=Citrobacter RepID=J0M387_9ENTR
D-galactonate transporter {ECO:0000313|EMBL:ETX68350.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
glucarate transporter
64_008_scaffold_246_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31215..31451
DNA (237bp) protein (79aa)
D-galactonate transporter n=6 Tax=Citrobacter RepID=J0M387_9ENTR
Putative glucarate transporter {ECO:0000313|EMBL:KEL77956.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
ygcZ; probable glucarate transporter
Displaying items 1-30 of 39 in total

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