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64_008_scaffold_87

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_87_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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75..413
DNA (339bp) protein (113aa)
Uncharacterized protein n=193 Tax=Clostridium difficile RepID=C9XMM4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98919.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
64_008_scaffold_87_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(540..1829)
DNA (1290bp) protein (430aa)
dacF1; D-alanyl-D-alanine carboxypeptidase (putativesporulation-specific penicillin-binding protein) (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CKH34431.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CKH34431.1};; D-alanyl-D-alanine carboxypeptidase (Putative sporulation-specific penicillin-binding protein) {ECO:0000313|EMBL:CDS85291.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CDS85291.1};; D-alanyl-D-alanine carboxypeptidase (Putativesporulation-specific penicillin-binding protein) {ECO:0000313|EMBL:CEJ99119.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CEJ99119.1};; Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDS88758.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Serine-type D-Ala-D-Ala carboxypeptidase n=122 Tax=Clostridium difficile RepID=G6BZP4_CLODI
64_008_scaffold_87_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1909..2613
DNA (705bp) protein (235aa)
Competence ComEA helix-hairpin-helix repeat region domain protein n=45 Tax=Clostridium difficile RepID=C9XMM2_CLODC
competence protein
Competence protein ComEA {ECO:0000313|EMBL:CAJ69383.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2801..3751
DNA (951bp) protein (317aa)
selD; selenide, water dikinase (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Selenide, water dikinase n=192 Tax=Clostridium difficile RepID=T3GDU3_CLODC
64_008_scaffold_87_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3769..5181
DNA (1413bp) protein (471aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L-seryl-tRNA(Sec) selenium transferase n=90 Tax=Clostridium difficile RepID=G6BZP1_CLODI
fdhA; selenocysteine synthase
64_008_scaffold_87_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5295..7178
DNA (1884bp) protein (628aa)
Selenocysteinyl-tRNA-specific translation factor n=184 Tax=Clostridium difficile RepID=Q182I0_CLOD6
selB; Selenocysteinyl-tRNA-specific translationfactor
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EQE61008.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_87_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7283..10021
DNA (2739bp) protein (913aa)
Two-component sensor histidinekinase,sporulation-associated spo0A (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Two-component sensor histidine kinase,sporulation-associated spo0A n=68 Tax=Clostridium difficile RepID=Q182H8_CLOD6
64_008_scaffold_87_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10140..11084)
DNA (945bp) protein (315aa)
Mannose-6-phosphate isomerase, class I {ECO:0000313|EMBL:EQE60918.1}; EC=5.3.1.8 {ECO:0000313|EMBL:EQE60918.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Mannose-6-phosphate isomerase n=180 Tax=Clostridium difficile RepID=C9XML7_CLODC
mannose-6-phosphate isomerase
64_008_scaffold_87_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11257..12618
DNA (1362bp) protein (454aa)
Dipeptidase family protein n=52 Tax=Clostridium difficile RepID=T3GGG9_CLODC
putative peptidase, M20A family
Putative peptidase, M20A family {ECO:0000313|EMBL:CEJ99112.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_87_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12706..14595
DNA (1890bp) protein (630aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=49 Tax=Clostridium difficile RepID=T3GIT1_CLODC
Transcription antiterminator, PTS operonregulator
Transcription antiterminator, PTS operon regulator {ECO:0000313|EMBL:CAJ69376.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14610..15065
DNA (456bp) protein (152aa)
PTS system, fructose subfamily, IIA component domain protein n=45 Tax=Clostridium difficile RepID=T3GI85_CLODC
PTS system fructose-like transporter subunit IIA
PTS system, fructose-like IIA component {ECO:0000313|EMBL:CAJ69375.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15124..15441
DNA (318bp) protein (106aa)
PTS system, fructose-like IIB component {ECO:0000313|EMBL:CCL22826.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL22826.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Fructose-like phosphotransferase enzyme IIB component 1 n=217 Tax=Clostridium difficile RepID=C9XML3_CLODC
PTS system transporter subunit IIB
64_008_scaffold_87_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15466..16728
DNA (1263bp) protein (421aa)
Fructose-like permease IIC component 1 n=180 Tax=Clostridium difficile RepID=T3GET4_CLODC
PTS system, fructose-like IIC component
PTS system, fructose-like IIC component {ECO:0000313|EMBL:CCL22825.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_87_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16833..17897
DNA (1065bp) protein (355aa)
putative Xaa-Pro aminopeptidase, M24 family (EC:3.4.13.9)
Putative Xaa-Pro aminopeptidase, M24 family {ECO:0000313|EMBL:CAJ69372.1}; EC=3.4.13.9 {ECO:0000313|EMBL:CAJ69372.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Metallopeptidase M24 family protein n=44 Tax=Clostridium difficile RepID=T3GGG4_CLODC
64_008_scaffold_87_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17951..19129
DNA (1179bp) protein (393aa)
Aminotransferase {ECO:0000313|EMBL:CKH33975.1}; EC=4.4.1.8 {ECO:0000313|EMBL:CKH33975.1};; Putative aminotransferase {ECO:0000313|EMBL:CEJ99106.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
C-S lyase family protein n=27 Tax=Clostridium difficile RepID=T3GIS7_CLODC
putative aminotransferase
64_008_scaffold_87_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19320..20378)
DNA (1059bp) protein (353aa)
ApbE family protein n=47 Tax=Clostridium difficile RepID=T3IMW6_CLODC
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CCL30721.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_008_scaffold_87_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20445..20816
DNA (372bp) protein (124aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=T3IPI1_CLODC
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CCK91288.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
64_008_scaffold_87_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20853..21527
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Uracil-DNA glycosylase n=205 Tax=Clostridium difficile RepID=UNG_CLOD6
ung; uracil-DNA glycosylase
64_008_scaffold_87_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21776..22615
DNA (840bp) protein (280aa)
3D domain protein n=123 Tax=Clostridium difficile RepID=C9XMK6_CLODC
hypothetical protein
3D domain protein {ECO:0000313|EMBL:EQE60959.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_87_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23106..23813
DNA (708bp) protein (236aa)
ThiF family protein n=158 Tax=Clostridium difficile RepID=T3GGH4_CLODC
intron RNA domain IV
Putative molybdenum cofactor biosynthesis {ECO:0000313|EMBL:CAJ69366.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23955..24791)
DNA (837bp) protein (279aa)
Metallo-beta-lactamase superfamily protein n=119 Tax=Clostridium difficile RepID=T2TBL5_CLODI
DNA uptake transporter
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQH98685.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_008_scaffold_87_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24979..25884
DNA (906bp) protein (302aa)
Uncharacterized protein n=185 Tax=Clostridium difficile RepID=C9XMK3_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CEJ99099.1}; Uncharacterized conserved protein {ECO:0000313|EMBL:CKH33755.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88102.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_87_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25893..27077
DNA (1185bp) protein (395aa)
Uncharacterized protein n=42 Tax=Clostridium difficile RepID=Q182G3_CLOD6
gnat family acetyltransferase
Gnat family acetyltransferase {ECO:0000313|EMBL:CAJ69363.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27240..28493
DNA (1254bp) protein (418aa)
ComEC/Rec2-related domain protein n=5 Tax=Clostridium difficile RepID=T2TXC0_CLODI
putative membrane protein
Competence membrane protein {ECO:0000313|EMBL:CKH33696.1}; Putative membrane protein {ECO:0000313|EMBL:CEJ99097.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_87_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28447..29490
DNA (1044bp) protein (348aa)
DNA polymerase III, delta subunit n=5 Tax=Clostridium difficile RepID=T3GEY5_CLODC
DNA polymerase III%2C delta subunit {ECO:0000313|EMBL:CKH33670.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA polymerase III, delta subunit
64_008_scaffold_87_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29677..29973)
DNA (297bp) protein (99aa)
30S ribosomal protein S20 n=5 Tax=Clostridium difficile RepID=D5Q2H3_CLODI
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
rpsT; 30S ribosomal protein S20
64_008_scaffold_87_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30542..31063
DNA (522bp) protein (174aa)
Bacterial regulatory , arsR family protein n=120 Tax=Clostridium difficile RepID=T3GIX8_CLODC
Transcriptional regulator, ArsR family
Transcriptional regulator {ECO:0000313|EMBL:CKH33625.1}; Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CEJ99094.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_87_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31097..31873
DNA (777bp) protein (259aa)
Alpha/beta hydrolase family protein n=24 Tax=Clostridium difficile RepID=T3GID3_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69358.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_87_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32216..33169
DNA (954bp) protein (318aa)
gpr; Spore endopeptidase (EC:3.4.24.78)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Germination protease n=178 Tax=Clostridium difficile RepID=T3GGP4_CLODC
64_008_scaffold_87_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33187..34206
DNA (1020bp) protein (340aa)
Stage II sporulation P family protein n=75 Tax=Clostridium difficile RepID=T3GIZ4_CLODC
spoIIP; Stage II sporulation protein P
Stage II sporulation protein P {ECO:0000313|EMBL:CEJ99091.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 44 in total

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