ggKbase home page

64_008_scaffold_93

Search features with annotation key words

Displaying items 1-30 of 54 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_93_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38..1429)
DNA (1392bp) protein (464aa)
FAD binding domain protein n=150 Tax=Clostridium difficile RepID=C9XNP9_CLODC
FAD/FMN-containing dehydrogenase
FAD binding domain protein {ECO:0000313|EMBL:EQG77445.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_93_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1440..2660)
DNA (1221bp) protein (407aa)
Electron transfer flavoFAD-binding domain protein n=176 Tax=Clostridium difficile RepID=C9XNP8_CLODC
electron transfer flavoprotein subunit alpha
Electron transfer flavoFAD-binding domain protein {ECO:0000313|EMBL:EQE67607.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_93_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2674..3462)
DNA (789bp) protein (263aa)
Electron transfer flavoprotein subunit alpha n=87 Tax=Clostridium difficile RepID=Q18B33_CLOD6
etfB4; Electron transfer flavoprotein subunit alpha
Electron transfer flavodomain protein {ECO:0000313|EMBL:EQI87213.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
64_008_scaffold_93_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3479..4753)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=C9XNP6_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77531.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_93_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4871..5584)
DNA (714bp) protein (238aa)
Bacterial regulatory s, gntR family protein n=195 Tax=Clostridium difficile RepID=C9XNP5_CLODC
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:CKG95699.1}; Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDT37359.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_93_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5709..6968
DNA (1260bp) protein (420aa)
Putative membrane protein n=167 Tax=Clostridium difficile RepID=T3HY60_CLODC
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCL21273.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_93_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7248..7814
DNA (567bp) protein (189aa)
Phage integrase family protein n=147 Tax=Clostridium difficile RepID=C9XNP3_CLODC
integrase/recombinase
Tyrosine DNA recombinase, XerC/XerD family {ECO:0000313|EMBL:CCK89954.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
64_008_scaffold_93_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8015..9220)
DNA (1206bp) protein (402aa)
hom1; Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Homoserine dehydrogenase n=41 Tax=Clostridium difficile RepID=T3HYA3_CLODC
64_008_scaffold_93_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9521..9889)
DNA (369bp) protein (123aa)
CRS1 / YhbY domain protein n=193 Tax=Clostridium difficile RepID=C9XNP1_CLODC
hypothetical protein
RNA-binding protein, YhbY family {ECO:0000313|EMBL:EHJ30624.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_008_scaffold_93_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9941..11227)
DNA (1287bp) protein (429aa)
GTPase Obg n=3 Tax=Clostridium difficile RepID=C9XNP0_CLODC
obg; Spo0B-associated GTP-binding protein
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_008_scaffold_93_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11329..11619)
DNA (291bp) protein (97aa)
50S ribosomal protein L27 n=221 Tax=Clostridium difficile RepID=RL27_CLOD6
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
64_008_scaffold_93_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11633..11950)
DNA (318bp) protein (106aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=C9XNN8_CLODC
hypothetical protein
Putative ribosome-associated protein {ECO:0000313|EMBL:CCL21267.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_93_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11965..12276)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=221 Tax=Clostridium difficile RepID=RL21_CLOD6
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_008_scaffold_93_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12377..13798)
DNA (1422bp) protein (474aa)
rng; Ribonuclease G (RNase G) (Cytoplasmic axialfilament protein) (EC:3.1.4.-)
Ribonuclease, Rne/Rng family domain protein {ECO:0000313|EMBL:EQE67611.1}; EC=3.1.4.- {ECO:0000313|EMBL:EQE67611.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Ribonuclease, Rne/Rng family domain protein n=179 Tax=Clostridium difficile RepID=T3HTF9_CLODC
64_008_scaffold_93_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13816..14517)
DNA (702bp) protein (234aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=C9XNN5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE67636.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_93_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14519..16363)
DNA (1845bp) protein (615aa)
Radical SAM superfamily protein n=170 Tax=Clostridium difficile RepID=T3HWF0_CLODC
Radical SAM superfamily protein {ECO:0000313|EMBL:EQE67647.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative radical SAM-superfamily protein
64_008_scaffold_93_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16682..17875
DNA (1194bp) protein (398aa)
Anaerobic nitric oxide reductase flavorubredoxin (FlRd) (FlavoRb) n=210 Tax=Clostridium difficile RepID=Q18B19_CLOD6
anaerobic nitric oxide reductase flavorubredoxin
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EHJ30632.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_008_scaffold_93_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17879..18046)
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T2VTA1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85832.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_93_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18087..19229)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=68 Tax=Clostridium difficile RepID=G6BVY0_CLODI
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CBE03199.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_008_scaffold_93_20
unknown

Not on your lists

comp(19403..19516)
DNA (114bp) protein (38aa)

This feature has no annotations

64_008_scaffold_93_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19733..20524)
DNA (792bp) protein (264aa)
Uncharacterized protein n=134 Tax=Clostridium difficile RepID=Q18B14_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77482.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_93_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20528..20857)
DNA (330bp) protein (110aa)
PadR-family transcriptional regulator n=185 Tax=Clostridium difficile RepID=C9XNN0_CLODC
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CCK89940.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
64_008_scaffold_93_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21341..21754)
DNA (414bp) protein (138aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Methylglyoxal synthase n=204 Tax=Clostridium difficile RepID=MGSA_CLOD6
mgsA; methylglyoxal synthase
64_008_scaffold_93_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21795..22925)
DNA (1131bp) protein (377aa)
Rod shape-determining protein n=25 Tax=Clostridium difficile RepID=C9XNM8_CLODC
rod shape-determining protein
Rod shape-determining protein {ECO:0000313|EMBL:CKG95238.1}; Rod shape-determining protein MrdB {ECO:0000313|EMBL:CEJ97722.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_93_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23010..23294)
DNA (285bp) protein (95aa)
Cell division topological specificity factor n=219 Tax=Clostridium difficile RepID=MINE_CLOD6
cell division topological specificity factor MinE
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_008_scaffold_93_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23312..24109)
DNA (798bp) protein (266aa)
Site-determining protein n=219 Tax=Clostridium difficile RepID=C9XNM6_CLODC
septum site-determining protein (cell division inhibitor)
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
64_008_scaffold_93_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24133..24816)
DNA (684bp) protein (228aa)
Probable septum site-determining protein MinC n=190 Tax=Clostridium difficile RepID=MINC_CLOD6 rbh
minC; Cell division regulator (septum placement)
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_93_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24914..27892)
DNA (2979bp) protein (993aa)
Putative penicillin-binding protein with a N-terminal TonB-box {ECO:0000313|EMBL:CCL21249.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CCL21249.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
penicillin-binding protein (EC:2.4.1.129)
Penicillin binding transpeptidase domain protein n=119 Tax=Clostridium difficile RepID=T2TM04_CLODI
64_008_scaffold_93_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27904..28392)
DNA (489bp) protein (163aa)
Rod shape-determining protein MreD n=56 Tax=Clostridium difficile RepID=T2U341_CLODI
putative permease
Putative permease {ECO:0000313|EMBL:CEJ97717.1}; Rod shape-determining protein MreD {ECO:0000313|EMBL:CKG95079.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_93_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28407..29300)
DNA (894bp) protein (298aa)
Cell shape-determining protein MreC n=116 Tax=Clostridium difficile RepID=Q18B04_CLOD6
mreC; Rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Displaying items 1-30 of 54 in total

View Taxonomy