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64_008_scaffold_99

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_99_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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663..1865
DNA (1203bp) protein (401aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=170 Tax=Clostridium difficile RepID=T3GDN3_CLODC
Two-component sensor histidine kinase
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQE60726.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_99_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1870..2640
DNA (771bp) protein (257aa)
Response regulator n=102 Tax=Clostridium difficile RepID=T3GF99_CLODC
two-component response regulator
Putative response regulator in two-component system with YpdA {ECO:0000313|EMBL:CDS88529.1}; Two-component response regulator {ECO:0000313|EMBL:CDT64493.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_99_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2786..4207
DNA (1422bp) protein (474aa)
Carbon starvation CstA family protein n=31 Tax=Clostridium difficile RepID=T3GHP0_CLODC
Carbon starvation protein, CstA {ECO:0000313|EMBL:CCL22958.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
cstA; Carbon starvation protein, CstA
64_008_scaffold_99_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4473..4955
DNA (483bp) protein (161aa)
Prokaryotic dksA/traR C4-type zinc finger family protein n=174 Tax=Clostridium difficile RepID=T3GHP7_CLODC
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EHJ24702.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_008_scaffold_99_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5010..5789
DNA (780bp) protein (260aa)
Polysaccharide deacetylase family protein n=116 Tax=Clostridium difficile RepID=T3GH46_CLODC
Putative oligosaccharide deacetylase {ECO:0000313|EMBL:CCL22956.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative oligosaccharide deacetylase
64_008_scaffold_99_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6099..6545
DNA (447bp) protein (149aa)
lspA; Lipoprotein signal peptidase (Prolipoproteinsignal peptidase) (Signal peptidase II) (SPase II) (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Lipoprotein signal peptidase n=98 Tax=Clostridium difficile RepID=LSPA_CLOD6
64_008_scaffold_99_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6514..7461
DNA (948bp) protein (316aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Pseudouridine synthase n=1 Tax=Clostridium difficile CD69 RepID=T3A1H9_CLODI
pseudouridylate synthase
64_008_scaffold_99_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7821..8354
DNA (534bp) protein (178aa)
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=213 Tax=Clostridium difficile RepID=PYRR_CLOD6 rbh
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_99_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8638..9849
DNA (1212bp) protein (404aa)
Uracil-xanthine permease family protein n=138 Tax=Clostridium difficile RepID=T3GFU6_CLODC
uraA; ABC-type transport system, uracil-specificpermease
ABC-type transport system, uracil-specificpermease {ECO:0000313|EMBL:CEJ99221.1}; Uracil permease {ECO:0000313|EMBL:CKH38098.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_99_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10148..11800
DNA (1653bp) protein (551aa)
ABC-type transport system,pristinamycin/multidrug-family ATP-binding protein {ECO:0000313|EMBL:CAJ69483.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ69483.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ABC-type transportsystem,pristinamycin/multidrug-family ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=26 Tax=Clostridium difficile RepID=T3GI83_CLODC
64_008_scaffold_99_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12015..13790)
DNA (1776bp) protein (592aa)
Fibronectin-binding A family protein n=54 Tax=Clostridium difficile RepID=T3GHN8_CLODC
Fibronectin-binding A family protein {ECO:0000313|EMBL:EQG75711.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
fbpA; fibronectin-binding protein
64_008_scaffold_99_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14086..15120
DNA (1035bp) protein (345aa)
Low specificity L-threonine aldolase {ECO:0000313|EMBL:CCL22949.1}; EC=4.1.2.5 {ECO:0000313|EMBL:CCL22949.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L-allo-threonine aldolase n=58 Tax=Clostridium difficile RepID=T3GIA0_CLODC
ltaE; low-specificity L-threonine aldolase
64_008_scaffold_99_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15407..16237
DNA (831bp) protein (277aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
dapF; Diaminopimelate epimerase (DAP epimerase) (EC:5.1.1.7)
Diaminopimelate epimerase n=132 Tax=Clostridium difficile RepID=T3GHQ0_CLODC
64_008_scaffold_99_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16241..17122
DNA (882bp) protein (294aa)
Uncharacterized protein n=204 Tax=Clostridium difficile RepID=C9XMV8_CLODC
hypothetical protein
TIGR00255 family protein {ECO:0000313|EMBL:EFH16497.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
64_008_scaffold_99_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17152..17769
DNA (618bp) protein (206aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Guanylate kinase n=92 Tax=Clostridium difficile RepID=T3GE82_CLODC
gmk; guanylate kinase
64_008_scaffold_99_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17772..18038
DNA (267bp) protein (89aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DNA-directed RNA polymerase subunit omega n=212 Tax=Clostridium difficile RepID=RPOZ_CLOD6
64_008_scaffold_99_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18043..19242
DNA (1200bp) protein (400aa)
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EQI80320.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EQI80320.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase n=157 Tax=Clostridium difficile RepID=T3GI95_CLODC
coaBC; coenzyme A biosynthesis bifunctional protein
64_008_scaffold_99_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19517..22006
DNA (2490bp) protein (830aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Primosomal protein N n=6 Tax=Clostridium difficile RepID=T3GEA2_CLODC
priA; primosomal protein N'
64_008_scaffold_99_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22024..22464
DNA (441bp) protein (147aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Peptide deformylase n=185 Tax=Clostridium difficile RepID=C9XMV3_CLODC
def2; peptide deformylase 2
64_008_scaffold_99_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22479..23408
DNA (930bp) protein (310aa)
fmt; Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Methionyl-tRNA formyltransferase n=10 Tax=Clostridium difficile RepID=FMT_CLOD6 rbh
64_008_scaffold_99_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23418..24170
DNA (753bp) protein (251aa)
Uncharacterized protein n=21 Tax=Clostridium difficile RepID=T3GHR8_CLODC
conserved hypothetical protein
Protein of uncharacterised function DUF116 {ECO:0000313|EMBL:CKH37641.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99209.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_99_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24239..24940
DNA (702bp) protein (234aa)
Neutral zinc metallopeptidase family protein n=197 Tax=Clostridium difficile RepID=T2TC91_CLODI
membrane-associated neutral zinc metallopeptidase
Putative metal-dependent peptidase {ECO:0000313|EMBL:CCK87960.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
64_008_scaffold_99_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25002..26327
DNA (1326bp) protein (442aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Ribosomal RNA small subunit methyltransferase n=175 Tax=Clostridium difficile RepID=C9XMU9_CLODC
rsmB; ribosomal RNA small subunit methyltransferase
64_008_scaffold_99_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26335..27366
DNA (1032bp) protein (344aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Probable dual-specificity RNA methyltransferase RlmN n=200 Tax=Clostridium difficile RepID=RLMN_CLOD6 rbh
putative radical SAM-family protein
64_008_scaffold_99_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27386..28138
DNA (753bp) protein (251aa)
Phosphatase 2C family protein n=217 Tax=Clostridium difficile RepID=C9XMU7_CLODC
serine/threonine phosphatase
Putative phosphatase, 2C family {ECO:0000313|EMBL:CCK95095.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
64_008_scaffold_99_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28155..30170
DNA (2016bp) protein (672aa)
Phosphotransferase enzyme family protein n=156 Tax=Clostridium difficile RepID=T3GHR3_CLODC
Phosphotransferase enzyme family protein {ECO:0000313|EMBL:EQI80376.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
stk; serine/threonine-protein kinase and phosphatase
64_008_scaffold_99_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30278..31015
DNA (738bp) protein (246aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) {ECO:0000313|EMBL:CAJ69466.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAJ69466.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Short chain dehydrogenase family protein n=112 Tax=Clostridium difficile RepID=T3GDA9_CLODC
64_008_scaffold_99_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31113..31997
DNA (885bp) protein (295aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Putative ribosome biogenesis GTPase RsgA n=10 Tax=Clostridium difficile RepID=T3GE94_CLODC
ATP/GTP-binding protein
64_008_scaffold_99_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32002..32673
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Ribulose-phosphate 3-epimerase n=148 Tax=Clostridium difficile RepID=C9XMU3_CLODC
ribulose-phosphate 3-epimerase
64_008_scaffold_99_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32682..33323
DNA (642bp) protein (214aa)
thiN; Thiamine pyrophosphokinase (TPK) (Thiaminediphospho kinase) (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EQG75324.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EQG75324.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Thiamine pyrophosphokinase n=27 Tax=Clostridium difficile RepID=T3GIA8_CLODC
Displaying items 1-30 of 43 in total

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