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64_008_scaffold_223

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_223_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..85)
DNA (84bp) protein (28aa)
Putative rubrerythrin (Rr) {ECO:0000313|EMBL:CEJ98062.1}; Ruberythrin {ECO:0000313|EMBL:CKH04719.1}; EC=1.11.1.1 {ECO:0000313|EMBL:CKH04719.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Reverse rubrerythrin-1 n=1 Tax=Clostridium difficile DA00183 RepID=T3RCE0_CLODI
ruberythrin
64_008_scaffold_223_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(308..1222)
DNA (915bp) protein (305aa)
EamA-like transporter family protein n=43 Tax=Clostridium difficile RepID=T2UUZ0_CLODI
putative transporter
Putative transporter {ECO:0000313|EMBL:CCL21650.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_223_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1638..2519
DNA (882bp) protein (294aa)
Polysaccharide deacetylase family protein n=167 Tax=Clostridium difficile RepID=T3HDY0_CLODC
polysaccharide deacetylase
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:EQI00353.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_008_scaffold_223_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2580..3788)
DNA (1209bp) protein (403aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Tyrosine--tRNA ligase n=170 Tax=Clostridium difficile RepID=C9XP46_CLODC
64_008_scaffold_223_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4265..5254)
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=G6BXH2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE03874.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_008_scaffold_223_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5406..5846
DNA (441bp) protein (147aa)
Acetyltransferase family protein n=150 Tax=Clostridium difficile RepID=T3HBU9_CLODC
putative acyltransferase
Acetyltransferase family protein {ECO:0000313|EMBL:EQG75459.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_223_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6173..6400
DNA (228bp) protein (76aa)
FeoA domain protein n=222 Tax=Clostridium difficile RepID=C9XMI8_CLODC
feoA2; ferrous ion transport protein
FeoA domain protein {ECO:0000313|EMBL:EQG76678.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_223_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6426..8546
DNA (2121bp) protein (707aa)
Ferrous iron transport protein B n=152 Tax=Clostridium difficile RepID=C9XMI7_CLODC
feoB2; ferrous ion transport protein
Putative ferrous ion transport protein {ECO:0000313|EMBL:CBE03869.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_008_scaffold_223_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8679..9497)
DNA (819bp) protein (273aa)
MerR regulatory family protein n=109 Tax=Clostridium difficile RepID=C9XMI6_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL21642.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_223_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9716..9988
DNA (273bp) protein (91aa)
Uncharacterized protein n=146 Tax=Clostridium difficile RepID=T3HE99_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62824.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_223_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11370..13463)
DNA (2094bp) protein (698aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate kinase signaling protein {ECO:0000313|EMBL:CAJ68380.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CAJ68380.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Diguanylate cyclase domain protein n=37 Tax=Clostridium difficile RepID=T2TKB9_CLODI
64_008_scaffold_223_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14143..15039
DNA (897bp) protein (299aa)
Uncharacterized protein n=98 Tax=Clostridium difficile RepID=T3HEU0_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66322.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_223_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15014..15841
DNA (828bp) protein (276aa)
panB; Ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=105 Tax=Clostridium difficile RepID=PANB_CLOD6 rbh
64_008_scaffold_223_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15860..16708
DNA (849bp) protein (283aa)
panC; Pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Pantothenate synthetase n=122 Tax=Clostridium difficile RepID=PANC_CLOD6 rbh
64_008_scaffold_223_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17138..17320
DNA (183bp) protein (61aa)
Uncharacterized protein n=203 Tax=Clostridium difficile RepID=T3HCD8_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG75817.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_223_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18152..19066
DNA (915bp) protein (305aa)
Uncharacterized protein n=143 Tax=Clostridium difficile RepID=T3HEL1_CLODC
cotB; spore coat protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66311.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_223_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19456..20103
DNA (648bp) protein (216aa)
Uncharacterized protein n=26 Tax=Clostridium difficile RepID=Q18C30_CLOD6
hypothetical protein
Lactate utilization protein B/C {ECO:0000313|EMBL:CKH05624.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98098.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_223_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20270..20869)
DNA (600bp) protein (200aa)
Uncharacterized protein n=152 Tax=Clostridium difficile RepID=G6BXF8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29241.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
intron RNA domain IV
64_008_scaffold_223_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20844..21743)
DNA (900bp) protein (300aa)
4Fe-4S binding domain protein n=25 Tax=Clostridium difficile RepID=T3HFP5_CLODC
putative iron-sulfur binding protein
Putative iron-sulfur binding protein {ECO:0000313|EMBL:CAJ68373.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_223_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21754..21903)
DNA (150bp) protein (50aa)
Uncharacterized protein n=186 Tax=Clostridium difficile RepID=C9XKW9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI00334.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_008_scaffold_223_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21896..22480)
DNA (585bp) protein (195aa)
AhpC/TSA family protein n=139 Tax=Clostridium difficile RepID=T3HAC5_CLODC
putative thioredoxin
Putative thioredoxin {ECO:0000313|EMBL:CDS86560.1}; Thioredoxin {ECO:0000313|EMBL:CKH05557.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_223_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22869..24194
DNA (1326bp) protein (442aa)
EA protein n=35 Tax=Clostridium difficile RepID=Q7WZ38_CLODI
putative drug/sodium antiporter, MATE family
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CAJ68370.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_223_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24289..25083)
DNA (795bp) protein (265aa)
ABC-type transport system, multidrug-family permease n=120 Tax=Clostridium difficile RepID=Q18C23_CLOD6
ABC transporter permease
ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CCL29650.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_008_scaffold_223_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25084..25959)
DNA (876bp) protein (292aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=69 Tax=Clostridium difficile RepID=T3HAG0_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQE66323.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_223_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25963..26331)
DNA (369bp) protein (123aa)
Bacterial regulatory s, gntR family protein n=204 Tax=Clostridium difficile RepID=C9XJA4_CLODC
transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_008_scaffold_223_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26513..27172)
DNA (660bp) protein (220aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Deoxyribose-phosphate aldolase n=182 Tax=Clostridium difficile RepID=DEOC_CLOD6 rbh
deoC; deoxyribose-phosphate aldolase
64_008_scaffold_223_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27208..28431)
DNA (1224bp) protein (408aa)
Integral membrane protein MviN n=111 Tax=Clostridium difficile RepID=T3HFT0_CLODC
Group I intron
Putative membrane protein (Virulence factor(Mvin) homologue) {ECO:0000313|EMBL:CEJ98087.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying 27 items

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