ggKbase home page

64_008_scaffold_248

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_248_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

88..1377
DNA (1290bp) protein (430aa)
Uncharacterized protein n=169 Tax=Clostridium difficile RepID=G6BY65_CLODI
transporter
Putative membrane protein {ECO:0000313|EMBL:CDS95022.1}; Transporter {ECO:0000313|EMBL:CKH89442.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89242.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_248_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1406..2086
DNA (681bp) protein (227aa)
putative hydrolase, HAD superfamily, IAsubfamily (EC:3.1.3.-)
HAD hydrolase, IA, variant 1 family protein n=95 Tax=Clostridium difficile RepID=T3GDF0_CLODC
HAD hydrolase, IA, variant 1 family protein {ECO:0000313|EMBL:EQE60228.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_248_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2142..2726
DNA (585bp) protein (195aa)
Uncharacterized protein n=14 Tax=Clostridium difficile RepID=T2ZY52_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33281.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
64_008_scaffold_248_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2902..3921
DNA (1020bp) protein (340aa)
Oxidoreductase , NAD-binding Rossmann fold family protein n=174 Tax=Clostridium difficile RepID=T3G9C5_CLODC
putative NAD(P)-binding oxidoreductase
Oxidoreductase , NAD-binding Rossmann fold family protein {ECO:0000313|EMBL:EQE60260.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_248_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4209..5399
DNA (1191bp) protein (397aa)
D-alanyl-lipoteichoic acid biosynthesis protein DltD n=194 Tax=Clostridium difficile RepID=T3G9D0_CLODC
dltD; putative D-alanine transferase DltD
D-alanine transferase DltD {ECO:0000313|EMBL:CCL23230.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_248_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5359..5505
DNA (147bp) protein (49aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3GB15_CLODC
Uncharacterised protein {ECO:0000313|EMBL:CKH89303.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
64_008_scaffold_248_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5520..7034
DNA (1515bp) protein (505aa)
dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 (EC:6.1.1.13)
D-alanine--poly(Phosphoribitol) ligase subunit 1 {ECO:0000313|EMBL:CAJ69741.1}; EC=6.1.1.13 {ECO:0000313|EMBL:CAJ69741.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
D-alanine--poly(phosphoribitol) ligase subunit 1 n=86 Tax=Clostridium difficile RepID=T3GDF5_CLODC
64_008_scaffold_248_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7034..8182
DNA (1149bp) protein (383aa)
D-alanyl-lipoteichoic acid biosynthesis protein DltB n=137 Tax=Clostridium difficile RepID=T3GCL0_CLODC
dltB; D-alanyl transferase DltB, MBOAT family
D-alanyl transferase DltB, MBOAT family {ECO:0000313|EMBL:CCL23227.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_008_scaffold_248_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8201..8431
DNA (231bp) protein (77aa)
dltC; D-alanine--poly(phosphoribitol) ligase subunit 2(D-alanyl carrier protein) (DCP) (EC:6.1.1.13)
D-alanine--poly(phosphoribitol) ligase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00565}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00565};; D-alanyl carrier protein {ECO:0000256|HAMAP-Rule:MF_00565}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
D-alanine--poly(phosphoribitol) ligase subunit 2 n=6 Tax=Clostridium difficile RepID=T3G881_CLODC
64_008_scaffold_248_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8648..9433
DNA (786bp) protein (262aa)
DeoR C terminal sensor domain protein n=36 Tax=Clostridium difficile RepID=T3GB25_CLODC
Transcriptional regulator, DeoR family
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CAJ69738.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_248_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9712..11622
DNA (1911bp) protein (637aa)
Bifunctional phosphonoacetaldehyde phosphonohydrolase/2-aminoethylphosphonate:pyruvate aminotransferase {ECO:0000313|EMBL:CKH89143.1}; EC=2.6.1.37 {ECO:0000313|EMBL:CKH89143.1};; Bifunctional phosphonoacetaldehydehydrolase/aminoethylphosphonate transaminase {ECO:0000313|EMBL:CEJ99479.1}; EC=2.6.1.37 {ECO:0000313|EMBL:CEJ99479.1};; EC=3.11.1.1 {ECO:0000313|EMBL:CEJ99479.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
phnXW; Bifunctional phosphonoacetaldehydehydrolase/aminoethylphosphonate transaminase [Includes:Phosphonoacetaldehyde hydrolase ;2-aminoethylphosphonate--pyruvate transaminase] (EC:2.6.1.37 3.11.1.1)
Bifunctional phosphonoacetaldehyde hydrolase/aminoethylphosphonate transaminase n=6 Tax=Clostridium difficile RepID=PHNXW_CLOD6 rbh
64_008_scaffold_248_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11981..12802
DNA (822bp) protein (274aa)
Polymer-forming cytoskeletal family protein n=129 Tax=Clostridium difficile PF5_CLODC">RepID=C9XPF5_CLODC
hypothetical protein
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CKH89125.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88616.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_248_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12843..13610
DNA (768bp) protein (256aa)
Polymer-forming cytoskeletal family protein n=51 Tax=Clostridium difficile PF4_CLODC">RepID=C9XPF4_CLODC
hypothetical protein
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CKH89096.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS95094.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_248_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13618..14238
DNA (621bp) protein (207aa)
Uncharacterized protein n=106 Tax=Clostridium difficile RepID=T3G9D5_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG74149.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_248_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14538..15125)
DNA (588bp) protein (196aa)
Rubrerythrin n=208 Tax=Clostridium difficile PF2_CLODC">RepID=C9XPF2_CLODC
rubrerythrin
Putative rubrerythrin {ECO:0000313|EMBL:EHJ33270.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_008_scaffold_248_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15211..15648)
DNA (438bp) protein (146aa)
Iron dependent repressor, N-terminal DNA binding domain protein n=194 Tax=Clostridium difficile PF1_CLODC">RepID=C9XPF1_CLODC
MarR family transcriptional regulator
Iron dependent repressor, N-terminal DNA binding domain protein {ECO:0000313|EMBL:EQE60200.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_248_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15752..16750
DNA (999bp) protein (333aa)
putative zinc-binding dehydrogenase (EC:1.6.5.5)
Quinone oxidoreductase, YhdH/YhfP family protein n=168 Tax=Clostridium difficile RepID=T3GCL4_CLODC
Quinone oxidoreductase, YhdH/YhfP family protein {ECO:0000313|EMBL:EQE60210.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_008_scaffold_248_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16870..17796)
DNA (927bp) protein (309aa)
nitrilase (EC:3.5.5.1)
Bifunctional nitrilase/nitrile hydratase NIT4 {ECO:0000313|EMBL:EQG74213.1}; EC=3.5.5.4 {ECO:0000313|EMBL:EQG74213.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Bifunctional nitrilase/nitrile hydratase NIT4 n=130 Tax=Clostridium difficile RepID=T3G886_CLODC
64_008_scaffold_248_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18182..19786
DNA (1605bp) protein (535aa)
Amidohydrolase family protein n=38 Tax=Clostridium difficile RepID=T3G9E0_CLODC
Putative amidohydrolase {ECO:0000313|EMBL:CAJ69729.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative amidohydrolase
64_008_scaffold_248_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20602..21873
DNA (1272bp) protein (424aa)
serS1A; Seryl-tRNA synthetase 1 (Seryl-tRNA(Ser/Sec)synthetase 1) (Serine--tRNA ligase 1) (SerRS 1) (EC:6.1.1.11)
Seryl-tRNA synthetase 1 (Seryl-tRNA(Ser/Sec) synthetase 1) (Serine--tRNA ligase 1) (SerRS 1) {ECO:0000313|EMBL:CAJ69728.1}; EC=6.1.1.11 {ECO:0000313|EMBL:CAJ69728.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Serine--tRNA ligase n=29 Tax=Clostridium difficile RepID=Q183S4_CLOD6
64_008_scaffold_248_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22244..23749
DNA (1506bp) protein (502aa)
Two-component sensor histidine kinase {ECO:0000313|EMBL:CEJ99469.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKH88881.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cupin domain protein n=14 Tax=Clostridium difficile RepID=T3GDH2_CLODC
Two-component sensor histidine kinase
64_008_scaffold_248_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23863..24561
DNA (699bp) protein (233aa)
Two-component response regulator n=202 Tax=Clostridium difficile RepID=Q183S6_CLOD6
two-component response regulator
Response regulator {ECO:0000313|EMBL:EQG74223.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_008_scaffold_248_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24846..25934
DNA (1089bp) protein (363aa)
Uncharacterized protein n=179 Tax=Clostridium difficile RepID=G6BTA6_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE06280.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Displaying 23 items

View Taxonomy