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64_008_scaffold_335

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_008_scaffold_335_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

695..1120
DNA (426bp) protein (142aa)
Translation initiation factor IF-3 n=213 Tax=Clostridium difficile RepID=Q189N1_CLOD6
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
64_008_scaffold_335_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1148..1342
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=209 Tax=Clostridium difficile RepID=RL35_CLOD6
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
64_008_scaffold_335_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1398..1754
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=115 Tax=Clostridium difficile RepID=RL20_CLOD6
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
64_008_scaffold_335_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2063..2608
DNA (546bp) protein (182aa)
Winged helix-turn-helix DNA-binding family protein n=34 Tax=Clostridium difficile RepID=T3I735_CLODC
Winged helix-turn-helix DNA-binding family protein {ECO:0000313|EMBL:EQG77497.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
64_008_scaffold_335_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3084..5009
DNA (1926bp) protein (642aa)
Calcineurin-like phosphoesterase family protein n=17 Tax=Clostridium difficile RepID=T3IC59_CLODC
putative nucleotide phosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:EHJ26653.1}; Flags: Fragment;; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_008_scaffold_335_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5090..6274)
DNA (1185bp) protein (395aa)
Integrase, lambdoid phage family Tn916-like,CTn6-Orf1 n=3 Tax=Clostridium difficile RepID=Q180G9_CLOD6
integrase
Integrase, lambdoid phage familyTn916-like,CTn6-Orf1 {ECO:0000313|EMBL:CEJ99979.1}; Site-specific recombinase XerD {ECO:0000313|EMBL:CKG76922.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6311..6505)
DNA (195bp) protein (65aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=T4F778_CLODI
Protein of unknown function (DUF3173).
Putative conjugative transposon protein Tn916-like, CTn6-Orf2 {ECO:0000313|EMBL:CAJ70224.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7079..7318)
DNA (240bp) protein (80aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=C3RNX6_9FIRM
conjugative transposon protein
Helix-turn-helix domain {ECO:0000313|EMBL:CKG76866.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf4 {ECO:0000313|EMBL:CEJ99982.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7315..7734)
DNA (420bp) protein (140aa)
Sigma-70 family RNA polymerase sigma factor n=3 Tax=Firmicutes RepID=C3RNX7_9FIRM
putative RNA polymerase sigma factorTn916-like,CTn6-Orf5
Putative RNA polymerase sigma factor Tn916-like,CTn6-Orf5 {ECO:0000313|EMBL:CAJ70226.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8335..8691
DNA (357bp) protein (119aa)
Helix-turn-helix n=4 Tax=Firmicutes RepID=D7GQX4_9FIRM
Transcriptional regulator, HTH-typeTn916-like,CTn6-Orf6
Helix-turn-helix {ECO:0000313|EMBL:CKG76818.1}; Transcriptional regulator, HTH-typeTn916-like,CTn6-Orf6 {ECO:0000313|EMBL:CEJ99984.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8724..9419)
DNA (696bp) protein (232aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4FA56_CLODI
conjugative transposon protein
Putative conjugative transposon protein Tn916-like, CTn6-Orf7 {ECO:0000313|EMBL:CAJ70228.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9600..10169
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family Tn916-like, CTn6-Orf8 n=5 Tax=Firmicutes RepID=Q180H8_CLOD6
Transcriptional regulator, TetR family;Tn916-like, CTn6-Orf8
Transcriptional regulator, TetR family Tn916-like, CTn6-Orf8 {ECO:0000313|EMBL:CAJ70229.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10233..10340
DNA (108bp) protein (36aa)
TfoX N-terminal domain n=5 Tax=Clostridiales RepID=D4LWR4_9FIRM
conjugative transposon protein
Putative conjugative transposon proteinTn916-like, CTn6-Orf9 {ECO:0000313|EMBL:CEJ99987.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10571..10813
DNA (243bp) protein (81aa)
Putative conjugative transposon protein Tn916-like, CTn6-Orf10 n=2 Tax=Clostridium difficile RepID=Q180H6_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn916-like, CTn6-Orf10 {ECO:0000313|EMBL:CEJ99988.1}; Uncharacterized protein {ECO:0000313|EMBL:CKG76696.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10810..11280
DNA (471bp) protein (157aa)
GyrI-like small molecule binding domain protein n=3 Tax=Clostridium difficile RepID=T4F782_CLODI
putative transcriptional regulatorTn916-like,CTn6-Orf11
DNA gyrase inhibitor {ECO:0000313|EMBL:CKG76665.1}; Putative transcriptional regulatorTn916-like,CTn6-Orf11 {ECO:0000313|EMBL:CEJ99989.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11582..12490)
DNA (909bp) protein (303aa)
Conjugative transposon TcpC family protein n=2 Tax=Clostridium difficile RepID=T4F2Z0_CLODI
putative conjugative transposon proteinTn916-like, CTn6-Orf12
Conjugative transposon protein {ECO:0000313|EMBL:CKG76644.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf12 {ECO:0000313|EMBL:CEJ99990.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12507..13511)
DNA (1005bp) protein (335aa)
Cell wall hydrolase {ECO:0000313|EMBL:CKG76621.1}; EC=3.4.-.- {ECO:0000313|EMBL:CKG76621.1};; Putative cell wall hydrolaseTn916-like,CTn6-Orf13 {ECO:0000313|EMBL:CEJ99991.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=A8RV73_9CLOT
cell wall hydrolase
64_008_scaffold_335_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13508..15889)
DNA (2382bp) protein (794aa)
Putative membrane protein Tn916-like,CTn6-Orf14 n=3 Tax=Clostridium difficile RepID=Q180I2_CLOD6
putative membrane protein Tn916-like,CTn6-Orf14
Putative membrane protein Tn916-like,CTn6-Orf14 {ECO:0000313|EMBL:CAJ70235.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15886..18339)
DNA (2454bp) protein (818aa)
AAA-like domain protein n=2 Tax=Clostridium difficile RepID=T4F8K5_CLODI
putative ATPase Tn916-like, CTn6-Orf15
Conjugative transposon protein {ECO:0000313|EMBL:CKG76570.1}; Putative ATPase Tn916-like, CTn6-Orf15 {ECO:0000313|EMBL:CEJ99993.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18323..18715)
DNA (393bp) protein (131aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=T5LTV1_9FIRM
conjugative transposon protein
Putative conjugative transposon proteinTn916-like, CTn6-Orf16 {ECO:0000313|EMBL:CEJ99994.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18805..19302)
DNA (498bp) protein (166aa)
Antirestriction family protein n=3 Tax=Clostridium difficile RepID=T4FA62_CLODI
putative antirestriction proteinTn916-like,CTn6-Orf17
Conjugative transposon protein {ECO:0000313|EMBL:CKG76542.1}; Putative antirestriction proteinTn916-like,CTn6-Orf17 {ECO:0000313|EMBL:CEJ99995.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19319..19591)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RNY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENZ19556.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Antirestriction protein (ArdA).
64_008_scaffold_335_23
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19886..20392)
DNA (507bp) protein (169aa)
Superinfection exclusion B family protein n=4 Tax=Clostridiales RepID=T4F8L0_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL40207.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
64_008_scaffold_335_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20578..20799)
DNA (222bp) protein (74aa)
Uncharacterized protein n=7 Tax=Clostridiales RepID=F7KH29_9FIRM
putative conjugative transposon proteinTn916-like, CTn6-Orf20
Conjugative transposon protein {ECO:0000313|EMBL:ENZ19554.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
64_008_scaffold_335_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20851..21888)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=F7KH28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33197.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
putative replication initiation factorTn916-like, CTn6-Orf21
64_008_scaffold_335_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22226..23623)
DNA (1398bp) protein (466aa)
FtsK/SpoIIIE family protein n=3 Tax=Clostridium difficile RepID=T4FA65_CLODI
putative cell-division FtsK/SpoIIIE-familyprotein Tn916-like, CTn6-Orf22
Putative cell-division FtsK/SpoIIIE-family protein Tn916-like, CTn6-Orf22 {ECO:0000313|EMBL:CAJ70243.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23659..24036)
DNA (378bp) protein (126aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4F9L2_CLODI
putative conjugative transposon proteinTn916-like, CTn6-Orf23
Conjugative transposon protein {ECO:0000313|EMBL:CKG76435.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf23 {ECO:0000313|EMBL:CEK00001.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_008_scaffold_335_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24058..24372)
DNA (315bp) protein (105aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=U4B4N3_CLODI
putative conjugative transposon protein DUF961family Tn916-like, CTn6-Orf24
Uncharacterized protein {ECO:0000313|EMBL:EDP15495.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
64_008_scaffold_335_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24629..25303
DNA (675bp) protein (225aa)
Putative membrane protein n=3 Tax=Clostridium difficile RepID=Q180J0_CLOD6
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ70246.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_008_scaffold_335_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25304..26197
DNA (894bp) protein (298aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=Q180J3_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70247.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying items 1-30 of 31 in total

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