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64_010_scaffold_29

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Displaying items 1-30 of 143 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_29_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(670..1284)
DNA (615bp) protein (205aa)
Chaperone protein TorD n=1 Tax=Citrobacter sp. KTE30 RepID=R8UYF8_9ENTR
Chaperone protein TorD {ECO:0000256|HAMAP-Rule:MF_01150, ECO:0000256|SAAS:SAAS00014573}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
torD; chaperone protein TorD
64_010_scaffold_29_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1281..3821)
DNA (2541bp) protein (847aa)
torA; trimethylamine-N-oxide reductase TorA (EC:1.7.2.3); K07811 trimethylamine-N-oxide reductase (cytochrome c) 1 [EC:1.7.2.3]
Trimethylamine N-oxide reductase I catalytic subunit n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QW01_CITFR
Trimethylamine-N-oxide reductase {ECO:0000313|EMBL:ETX72619.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_010_scaffold_29_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3811..4989)
DNA (1179bp) protein (393aa)
Cytochrome c-type protein torC n=5 Tax=Citrobacter RepID=J0M8S4_9ENTR
Cytochrome c-type protein TorC {ECO:0000313|EMBL:ETX72618.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein; K03532 trimethylamine-N-oxide reductase (cytochrome c) 1, cytochrome c-type subunit TorC
64_010_scaffold_29_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5121..5813
DNA (693bp) protein (231aa)
Response transcriptional regulator for torA n=6 Tax=Citrobacter RepID=J0VUU2_9ENTR
TorCAD operon transcriptional regulatory protein torR {ECO:0000313|EMBL:KEL80339.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
torR; DNA-binding transcriptional regulator TorR; K07772 two-component system, OmpR family, torCAD operon response regulator TorR
64_010_scaffold_29_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5786..6817)
DNA (1032bp) protein (344aa)
TMAO reductase system periplasmic protein TorT n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BAX4_CITFR
Reductase {ECO:0000313|EMBL:KJC13281.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
torT; periplasmic sensory protein TorT; K11930 periplasmic protein TorT
64_010_scaffold_29_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6945..9665
DNA (2721bp) protein (907aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
torS; Two-component sensor kinase and response regulator; K07647 two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
Hybrid sensory histidine kinase TorS n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CTQ1_CITFR
64_010_scaffold_29_trna_1
unknown

Not on your lists

comp(9706..9779)
DNA (74bp)
transferRNA Arg
64_010_scaffold_29_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9852..9998)
DNA (147bp) protein (49aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=J1G5Y1_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX72614.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_010_scaffold_29_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10033..10626
DNA (594bp) protein (198aa)
Regulatory protein n=5 Tax=Citrobacter RepID=J0M8S1_9ENTR
Fimbriae regulatory protein FimW {ECO:0000313|EMBL:KJC07990.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein; K08087 fimbrial protein FimW
64_010_scaffold_29_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11012..11734
DNA (723bp) protein (241aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8R808_CITFR
Uncharacterized protein {ECO:0000313|EMBL:ETX72612.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein; K08088 fimbrial protein FimY
64_010_scaffold_29_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12322..12954
DNA (633bp) protein (211aa)
Transcriptional regulator FimZ n=5 Tax=Citrobacter RepID=K8QZE2_CITFR
Bacterial regulatory s, luxR family protein {ECO:0000313|EMBL:KEL80346.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
transcriptional regulator FimZ; K07688 two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
64_010_scaffold_29_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13004..13540)
DNA (537bp) protein (179aa)
Fimbrial-like adhesin protein SfmF n=3 Tax=Citrobacter freundii RepID=K8R403_CITFR
Adhesin {ECO:0000313|EMBL:KJC13277.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
putative fimbrial protein; K07348 minor fimbrial subunit
64_010_scaffold_29_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13533..14540)
DNA (1008bp) protein (336aa)
Fimbrial adhesin subunit n=1 Tax=Citrobacter freundii RepID=Q8GC98_CITFR
Adhesin {ECO:0000313|EMBL:KJC07994.1}; Fimbrial adhesin subunit {ECO:0000313|EMBL:CAD56974.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein; K07350 minor fimbrial subunit
64_010_scaffold_29_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14545..17166)
DNA (2622bp) protein (874aa)
Outer membrane usher protein FimD n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DHN2_CITFR
Outer membrane usher protein {ECO:0000313|EMBL:CAD56973.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein; K07347 outer membrane usher protein
64_010_scaffold_29_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17174..17866)
DNA (693bp) protein (231aa)
Fimbrial chaperone protein FimC n=3 Tax=Citrobacter freundii RepID=K8R811_CITFR
Fimbrial chaperone protein {ECO:0000313|EMBL:CAD56972.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein; K07346 fimbrial chaperone protein
64_010_scaffold_29_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17908..18441)
DNA (534bp) protein (178aa)
Fimbrial protein FimI n=3 Tax=Citrobacter RepID=M3CA19_CITFR
Fimbrial family protein {ECO:0000313|EMBL:KEL80351.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein; K07351 fimbrial protein
64_010_scaffold_29_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18519..19073)
DNA (555bp) protein (185aa)
Type-1 fimbrial protein subunit A n=3 Tax=Citrobacter freundii RepID=K8R407_CITFR
Major fimbrial subunit {ECO:0000313|EMBL:CAD56970.1}; Type-1 fimbrial protein subunit A {ECO:0000313|EMBL:KJC07998.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
fimA; type-1 fimbrial protein, a chain; K07345 major type 1 subunit fimbrin (pilin)
64_010_scaffold_29_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19645..20511
DNA (867bp) protein (289aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=7 Tax=Citrobacter RepID=J1FX18_9ENTR
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
64_010_scaffold_29_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20513..20725
DNA (213bp) protein (71aa)
Cytoplasmic protein n=5 Tax=Citrobacter RepID=J0LT69_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CDL37875.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
64_010_scaffold_29_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20851..21375
DNA (525bp) protein (175aa)
Membrane-bound metal-dependent hydrolase n=3 Tax=Citrobacter RepID=K8R814_CITFR
Membrane protein {ECO:0000313|EMBL:KJC13269.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ybcI; putative membrane-bound metal-dependent hydrolase; K07038 inner membrane protein
64_010_scaffold_29_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21467..22852)
DNA (1386bp) protein (462aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=5 Tax=Citrobacter RepID=C1M8D1_9ENTR
64_010_scaffold_29_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23026..23520
DNA (495bp) protein (165aa)
peptidyl-prolyl cis-trans isomerase B (rotamase B); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Peptidyl-prolyl cis-trans isomerase n=13 Tax=Enterobacteriaceae RepID=A8AJS8_CITK8
64_010_scaffold_29_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23523..24245
DNA (723bp) protein (241aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
UDP-2,3-diacylglucosamine hydrolase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CTR6_CITFR
64_010_scaffold_29_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24484..24993
DNA (510bp) protein (170aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Citrobacter freundii RepID=K8QW23_CITFR
64_010_scaffold_29_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24990..26057
DNA (1068bp) protein (356aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citro
purK; N5-carboxyaminoimidazole ribonucleotide synthase; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R819_CITFR
64_010_scaffold_29_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26154..27239
DNA (1086bp) protein (362aa)
tRNA 2-selenouridine synthase {ECO:0000256|HAMAP-Rule:MF_01622, ECO:0000256|SAAS:SAAS00035454}; EC=2.9.1.- {ECO:0000256|HAMAP-Rule:MF_01622, ECO:0000256|SAAS:SAAS00035457};; Selenophosphate-dependent tRNA 2-selenouridine synthase {ECO:0000256|HAMAP-Rule:MF_01622}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
tRNA 2-selenouridine synthase; K06917 tRNA 2-selenouridine synthase [EC:2.9.1.-]
tRNA 2-selenouridine synthase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UXP0_9ENTR
64_010_scaffold_29_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27240..27899)
DNA (660bp) protein (220aa)
ABC transporter integral membrane protein n=5 Tax=Citrobacter RepID=J0LT78_9ENTR
Methionine ABC transporter permease {ECO:0000313|EMBL:KJC08025.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein; K02072 D-methionine transport system permease protein
64_010_scaffold_29_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27892..28908)
DNA (1017bp) protein (339aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3CTS1_CITFR
hypothetical protein; K02071 D-methionine transport system ATP-binding protein
64_010_scaffold_29_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28972..29802)
DNA (831bp) protein (277aa)
YaeC family lipoprotein n=4 Tax=Citrobacter RepID=J0VKR2_9ENTR
Methionine ABC transporter ATPase {ECO:0000313|EMBL:KJC13243.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ABC-type metal ion transport system, periplasmic component/surface antigen
64_010_scaffold_29_29
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30072..31205)
DNA (1134bp) protein (378aa)
Outer membrane protein n=7 Tax=Enterobacteriaceae RepID=J0LZF9_9ENTR
Putative outer membrane protein {ECO:0000313|EMBL:EIQ77450.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
Displaying items 1-30 of 143 in total

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