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64_010_scaffold_580

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_580_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(190..948)
DNA (759bp) protein (253aa)
ABC transporter-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
General amino acid abc atp-binding protein n=4 Tax=Citrobacter RepID=J0VUT6_9ENTR
Eneral L-amino acid transport system ATP-binding protein {ECO:0000313|EMBL:ETX68056.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_010_scaffold_580_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(956..2059)
DNA (1104bp) protein (368aa)
Inner membrane amino-acid ABC transporter permease yhdY n=3 Tax=Citrobacter RepID=J1G655_9ENTR
Inner membrane amino-acid ABC transporter permease protein yhdY {ECO:0000313|EMBL:KEL78008.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
transport system permease; K09971 general L-amino acid transport system permease protein
64_010_scaffold_580_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2069..3250)
DNA (1182bp) protein (394aa)
Amino acid ABC transporter permease n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DQ00_CITFR
Amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein {ECO:0000313|EMBL:KEL78009.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein; K09970 general L-amino acid transport system permease protein
64_010_scaffold_580_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3320..4345)
DNA (1026bp) protein (342aa)
General amino acid ABC transporter, periplasmic binding protein n=7 Tax=Citrobacter RepID=J1G5X7_9ENTR
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKC64280.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein; K09969 general L-amino acid transport system substrate-binding protein
64_010_scaffold_580_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4806..5027)
DNA (222bp) protein (74aa)
Uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C1MA68_9ENTR
Outer membrane protein {ECO:0000313|EMBL:ETX68052.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
64_010_scaffold_580_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5298..8411)
DNA (3114bp) protein (1038aa)
Acriflavine resistance protein F n=3 Tax=Citrobacter RepID=J0VUT1_9ENTR
Multidrug efflux protein AcrB {ECO:0000313|EMBL:ETX68051.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
acrF; acriflavin resistance protein F; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
64_010_scaffold_580_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8423..9583)
DNA (1161bp) protein (387aa)
Acriflavine resistance protein E n=1 Tax=Citrobacter sp. KTE30 RepID=R8UN94_9ENTR
Multidrug transporter {ECO:0000313|EMBL:KJC04428.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
acrE; acriflavin resistance protein E; K03585 membrane fusion protein
64_010_scaffold_580_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10003..10659
DNA (657bp) protein (219aa)
Transcriptional repressor for envCD n=5 Tax=Citrobacter RepID=J0M209_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KJC09620.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
transcriptional regulator
64_010_scaffold_580_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10705..10869)
DNA (165bp) protein (55aa)
Uncharacterized protein n=9 Tax=Citrobacter RepID=C1MA64_9ENTR
Membrane protein {ECO:0000313|EMBL:ETX62520.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
64_010_scaffold_580_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10952..11836)
DNA (885bp) protein (295aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Methyltransferase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QPS2_CITFR
SBOV34521; putative methyltransferase
64_010_scaffold_580_11
Enterobacter cancerogenus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11925..12236)
DNA (312bp) protein (104aa)
DNA-binding protein Fis n=2250 Tax=Bacteria RepID=FIS_CITK8
fis; DNA-binding protein Fis; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
DNA-binding protein Fis {ECO:0000256|HAMAP-Rule:MF_00166, ECO:0000256|SAAS:SAAS00253269}; TaxID=500639 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cancerogenus ATCC 35316.;"
64_010_scaffold_580_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12196..13020)
DNA (825bp) protein (275aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
tRNA-dihydrouridine synthase B; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
tRNA-dihydrouridine synthase n=9 Tax=Citrobacter RepID=K8QZN5_CITFR
64_010_scaffold_580_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13412..14188)
DNA (777bp) protein (259aa)
hypothetical protein; K01674 carbonic anhydrase [EC:4.2.1.1]
Uncharacterized protein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QRA8_CITFR
Carbonic anhydrase {ECO:0000313|EMBL:KJC04422.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
64_010_scaffold_580_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14317..15198)
DNA (882bp) protein (294aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=2 Tax=Citrobacter freundii RepID=K8QVX0_CITFR
64_010_scaffold_580_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15210..16661)
DNA (1452bp) protein (484aa)
Sodium/pantothenate symporter n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QPS7_CITFR
Sodium/panthothenate symporter {ECO:0000313|EMBL:KJC04420.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
panF; sodium/panthothenate symporter; K14392 sodium/pantothenate symporter
64_010_scaffold_580_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16651..16893)
DNA (243bp) protein (81aa)
Uncharacterized protein n=5 Tax=Citrobacter RepID=K8QMM5_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KEL78024.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Predicted membrane protein
64_010_scaffold_580_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17001..18350)
DNA (1350bp) protein (450aa)
accC; biotin carboxylase (acetyl-CoA carboxylase subunit A) (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl CoA carboxylase n=6 Tax=Citrobacter RepID=J0VUQ7_9ENTR
Biotin carboxylase {ECO:0000313|EMBL:ETX68041.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
64_010_scaffold_580_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18361..18831)
DNA (471bp) protein (157aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=11 Tax=Citrobacter RepID=C1MA55_9ENTR
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:KEL78026.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein
64_010_scaffold_580_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19097..19696)
DNA (600bp) protein (200aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Citrobacter sp. KTE30 RepID=R8UP16_9ENTR
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
putative sulfite oxidase subunit YedZ
64_010_scaffold_580_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19697..20701)
DNA (1005bp) protein (335aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D1R5_CITFR
oxidoreductase; K07147
64_010_scaffold_580_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20821..21795)
DNA (975bp) protein (325aa)
Oxidoreductase, Zn-dependent and NAD(P)-binding n=1 Tax=Citrobacter sp. KTE30 RepID=R8UN51_9ENTR
Quinone oxidoreductase {ECO:0000313|EMBL:KJC09607.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
SBOV34421; hypothetical protein
64_010_scaffold_580_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22021..23961
DNA (1941bp) protein (647aa)
RNase E specificity factor CsrD n=1 Tax=Citrobacter sp. KTE30 RepID=R8UN81_9ENTR
Regulatory protein CsrD {ECO:0000313|EMBL:KJC04413.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
regulatory protein CsrD
Displaying 22 items

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