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64_010_scaffold_66

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Displaying items 1-30 of 100 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_66_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85..618
DNA (534bp) protein (178aa)
RNA polymerase sigma factor, sigma-70 family protein n=11 Tax=Clostridium difficile RepID=T2X6Q3_CLODI
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Sigma-70 region 2 {ECO:0000313|EMBL:EHJ29588.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_66_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

615..1376
DNA (762bp) protein (254aa)
Putative membrane protein n=23 Tax=Clostridium difficile RepID=T3GMU1_CLODC
hypothetical protein
Extracytoplasmic function (ECF) anti-sigmafactor rsiU {ECO:0000313|EMBL:CEJ98461.1}; Putative transmembrane protein {ECO:0000313|EMBL:CKH15421.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_66_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1414..2280
DNA (867bp) protein (289aa)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CAJ68765.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ68765.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ABC transporter family protein n=35 Tax=Clostridium difficile RepID=T3GLN2_CLODC
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein
64_010_scaffold_66_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2301..3542
DNA (1242bp) protein (414aa)
ABC-type transport system, multidrug-family permease n=35 Tax=Clostridium difficile RepID=Q187K2_CLOD6
hypothetical protein
ABC-type transport system, multidrug-familypermease {ECO:0000313|EMBL:CEJ98463.1}; Putative transmembrane protein {ECO:0000313|EMBL:CKH15468.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_66_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3766..4338)
DNA (573bp) protein (191aa)
NMT1-like family protein n=28 Tax=Clostridium difficile RepID=T3GP14_CLODC
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CKH15492.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
64_010_scaffold_66_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4724..5458
DNA (735bp) protein (245aa)
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CKH15518.1}; EC=2.1.1.197 {ECO:0000313|EMBL:CKH15518.1};; Putative methyltransferase, type 11 family {ECO:0000313|EMBL:CEJ98464.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Methyltransferase domain protein n=6 Tax=Clostridium difficile RepID=T3GQP5_CLODC
hypothetical protein
64_010_scaffold_66_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5601..6092)
DNA (492bp) protein (164aa)
Prolyl-tRNA editing protein proX n=191 Tax=Clostridium difficile RepID=C9XJC2_CLODC
regulatory protein
YbaK/proline--tRNA ligase associated domain protein {ECO:0000313|EMBL:EHJ29594.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_66_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6441..6824
DNA (384bp) protein (128aa)
Uncharacterized protein n=162 Tax=Clostridium difficile RepID=T3GLA1_CLODC
plasmid-like protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76752.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_66_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7332..7715
DNA (384bp) protein (128aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=Q187K4_CLOD6
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CDS87099.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS87782.1}; YtxH-like protein {ECO:0000313|EMBL:CKH15600.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_66_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7717..8067
DNA (351bp) protein (117aa)
Uncharacterized protein n=156 Tax=Clostridium difficile RepID=Q187K8_CLOD6
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:CCL30099.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_010_scaffold_66_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8168..8626)
DNA (459bp) protein (153aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3GL70_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CAJ68772.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_66_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8671..9459)
DNA (789bp) protein (263aa)
phage-related cell wall hydrolase (endolysin); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase family protein n=140 Tax=Clostridium difficile RepID=C9XJC7_CLODC
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EQH99536.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_010_scaffold_66_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9598..10035)
DNA (438bp) protein (146aa)
phage-related deoxycytidylate deaminase; K01493 dCMP deaminase [EC:3.5.4.12]
Phage-related deoxycytidylate deaminase {ECO:0000313|EMBL:CKH15754.1}; Putative dCMP deaminase {ECO:0000313|EMBL:CEJ98471.1}; EC=3.5.4.12 {ECO:0000313|EMBL:CEJ98471.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cytidine and deoxycytidylate deaminase zinc-binding region family protein n=51 Tax=Clostridium difficile RepID=T3GRF5_CLODC
64_010_scaffold_66_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10269..10472)
DNA (204bp) protein (68aa)
Uncharacterized protein n=211 Tax=Clostridium difficile RepID=C9XJC9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH07165.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
64_010_scaffold_66_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10857..11366
DNA (510bp) protein (170aa)
Helix-turn-helix family protein n=99 Tax=Clostridium difficile RepID=T3GNW0_CLODC
phage repressor
Transcriptional regulator, Phage-type {ECO:0000313|EMBL:CAJ68776.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_66_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11876..12307
DNA (432bp) protein (144aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Signal peptidase (SPase) II family protein n=46 Tax=Clostridium difficile RepID=T3GMD5_CLODC
Putative lipoprotein signal peptidase {ECO:0000313|EMBL:CEJ98475.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_66_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12741..13541)
DNA (801bp) protein (267aa)
ABC transporter, permease protein n=205 Tax=Clostridium difficile RepID=C9XJD3_CLODC
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQH99541.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_010_scaffold_66_18
unknown

Not on your lists

13658..13747
DNA (90bp) protein (30aa)

This feature has no annotations

64_010_scaffold_66_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13736..15334)
DNA (1599bp) protein (533aa)
Site-specific recombinase, resolvase family n=7 Tax=Clostridium difficile RepID=Q187L8_CLOD6
Site-specific recombinase, resolvase family {ECO:0000313|EMBL:CEJ98478.1}; Site-specific recombinases {ECO:0000313|EMBL:CKH15880.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
site-specific recombinase
64_010_scaffold_66_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15662..15838
DNA (177bp) protein (59aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=Q187L7_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22102.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_010_scaffold_66_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16012..17142
DNA (1131bp) protein (377aa)
Ethanolamine iron-dependent Alcohol dehydrogenase {ECO:0000313|EMBL:CAJ68783.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CAJ68783.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Iron-containing alcohol dehydrogenase family protein n=23 Tax=Clostridium difficile RepID=T3GQD4_CLODC
pduQ; ethanolamine/propanediol utilization propanol dehydrogenase
64_010_scaffold_66_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17383..17733
DNA (351bp) protein (117aa)
Propanediol utilization protein PduU n=196 Tax=Clostridium difficile RepID=T3GR55_CLODC
pduU; ethanolamine/propanediol utilization protein; K04031 ethanolamine utilization protein EutS
BMC domain protein {ECO:0000313|EMBL:EHJ29609.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_66_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17741..18175
DNA (435bp) protein (145aa)
Ethanolamine utilization protein, EutP n=6 Tax=Clostridium difficile RepID=T3GNP4_CLODC
pduV; ethanolamine/propanediol utilization protein; K04029 ethanolamine utilization protein EutP
Ethanolamine utilization protein {ECO:0000313|EMBL:CAJ68785.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_66_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18284..18859
DNA (576bp) protein (192aa)
Two-component response regulator n=132 Tax=Clostridium difficile RepID=C9YMM2_CLODR
two-component response regulator
Two-component response regulator, Ethanolamine specific {ECO:0000313|EMBL:CCK90606.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
64_010_scaffold_66_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18852..20261
DNA (1410bp) protein (470aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=188 Tax=Clostridium difficile RepID=T3GKZ2_CLODC
two-component sensor histidine kinase
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQH99548.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_010_scaffold_66_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20445..21878
DNA (1434bp) protein (478aa)
Ethanolamine utilization EutA family protein n=6 Tax=Clostridium difficile RepID=T3GQD9_CLODC
eutA; reactivating factor for ethanolamine ammonia lyase; K04019 ethanolamine utilization protein EutA
Ethanolamine reactivating factor for ammonialyase eutBC {ECO:0000313|EMBL:CEJ98485.1}; Reactivating factor for ethanolamine ammonia lyase {ECO:0000313|EMBL:CKH16080.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_66_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21896..23260
DNA (1365bp) protein (455aa)
eutB; ethanolamine/propanediol ammonia-lyase heavy chain (EC:4.3.1.7); K03735 ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
Ethanolamine ammonia lyase large subunit {ECO:0000313|EMBL:CEJ98486.1}; EC=4.3.1.7 {ECO:0000313|EMBL:CEJ98486.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Ethanolamine ammonia lyase large subunit family protein n=6 Tax=Clostridium difficile RepID=T3GR60_CLODC
64_010_scaffold_66_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23273..24154
DNA (882bp) protein (294aa)
eutC; ethanolamine ammonia-lyase small subunit (EC:4.3.1.7); K03736 ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
Ethanolamine ammonia-lyase light chain {ECO:0000256|HAMAP-Rule:MF_00601, ECO:0000256|SAAS:SAAS00064961}; EC=4.3.1.7 {ECO:0000256|HAMAP-Rule:MF_00601, ECO:0000256|SAAS:SAAS00064958};; Ethanolamine ammonia-lyase small subunit {ECO:0000256|HAMAP-Rule:MF_00601}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Ethanolamine ammonia-lyase light chain n=118 Tax=Clostridium difficile RepID=EUTC_CLOD6
64_010_scaffold_66_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24174..24827
DNA (654bp) protein (218aa)
Ethanolamine utilization protein EutL n=193 Tax=Clostridium difficile RepID=T3GM81_CLODC
eutL; ethanolamine/propanediol utilization protein; K04026 ethanolamine utilization protein EutL
Ethanolamine utilization protein EutL {ECO:0000313|EMBL:EQE64538.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_010_scaffold_66_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24838..25539
DNA (702bp) protein (234aa)
BMC domain protein n=15 Tax=Clostridium difficile RepID=T3GKZ5_CLODC
ethanolamine/propanediol utilisation protein
Ethanolamine carboxysome strutural protein {ECO:0000313|EMBL:CEJ98489.1}; Ethanolamine/propanediol utilisation protein {ECO:0000313|EMBL:CKH16170.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 100 in total

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