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64_010_scaffold_98

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Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_98_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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544..1614
DNA (1071bp) protein (357aa)
ABC-type transport system, sugar-family ATP-binding protein {ECO:0000313|EMBL:CCL23866.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL23866.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter family protein n=179 Tax=Clostridium difficile RepID=T3G5G1_CLODC
ABC transporter ATP-binding protein
64_010_scaffold_98_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1598..2467
DNA (870bp) protein (290aa)
ABC transporter, permease protein n=194 Tax=Clostridium difficile RepID=C9XS05_CLODC
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:CKG74260.1}; ABC transporter, permease protein {ECO:0000313|EMBL:CDS89885.1}; ABC-type transport system, sugar-family permease {ECO:0000313|EMBL:CDS89691.1}; ABC-type transport system, sugar-familypermease {ECO:0000313|EMBL:CEK00125.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_98_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2424..3371
DNA (948bp) protein (316aa)
ABC-type transport system, sugar-family permease n=1 Tax=Clostridium difficile E19 RepID=U3YMD0_CLODI
ABC-type transport system, sugar-family permease {ECO:0000313|EMBL:CCL23864.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter permease
64_010_scaffold_98_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3402..4706
DNA (1305bp) protein (435aa)
Bacterial extracellular solute-binding family protein n=182 Tax=Clostridium difficile RepID=T3G1C8_CLODC
ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EHJ29057.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_98_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4769..6031
DNA (1263bp) protein (421aa)
Putative nucleotide pyrophosphatase {ECO:0000313|EMBL:CAJ70316.1}; EC=3.6.1.9 {ECO:0000313|EMBL:CAJ70316.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Type I phosphodiesterase / nucleotide pyrophosphatase family protein n=25 Tax=Clostridium difficile RepID=T3G350_CLODC
nucleotide pyrophosphatase
64_010_scaffold_98_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6194..8188
DNA (1995bp) protein (665aa)
UvrABC system protein B n=173 Tax=Clostridium difficile RepID=C9XS01_CLODC
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
uvrB; excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
64_010_scaffold_98_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8207..11032
DNA (2826bp) protein (942aa)
UvrABC system protein A n=193 Tax=Clostridium difficile RepID=C9XS00_CLODC
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_010_scaffold_98_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11291..13108
DNA (1818bp) protein (606aa)
UvrABC system protein C n=175 Tax=Clostridium difficile RepID=UVRC_CLOD6
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
64_010_scaffold_98_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13108..14037
DNA (930bp) protein (310aa)
hprK; HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
HPr kinase/phosphorylase n=215 Tax=Clostridium difficile RepID=C9XRZ8_CLODC
64_010_scaffold_98_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14251..16047
DNA (1797bp) protein (599aa)
MutS domain V family protein n=5 Tax=Clostridium difficile RepID=T3G0J6_CLODC
Putative DNA mismatch repair ATPase MutS {ECO:0000313|EMBL:CAJ70311.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
DNA mismatch repair protein
64_010_scaffold_98_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16187..17968)
DNA (1782bp) protein (594aa)
Putative iron-only hydrogenase, catalytic subunit HymC-like {ECO:0000313|EMBL:CCL31642.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CCL31642.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
[FeFe] hydrogenase, group A family protein n=199 Tax=Clostridium difficile RepID=T2T8U1_CLODI
hymC; iron-only hydrogenase, catalytic subunit
64_010_scaffold_98_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17991..19877)
DNA (1887bp) protein (629aa)
Putative iron-only hydrogenase,electron-transferring subunit HymB-like {ECO:0000313|EMBL:CCK92201.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CCK92201.1};; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
hymB; iron-only hydrogenase, electron-transferring subunit; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
4Fe-4S binding domain protein n=211 Tax=Clostridium difficile RepID=C9XRZ5_CLODC
64_010_scaffold_98_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19894..20391)
DNA (498bp) protein (166aa)
hymA; iron-only hydrogenase, electron-transferring subunit; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=210 Tax=Clostridium difficile RepID=T3G5G6_CLODC
Respiratory-chain NADH dehydrogenase 24 Kd subunit {ECO:0000313|EMBL:EQF22882.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
64_010_scaffold_98_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20709..22190)
DNA (1482bp) protein (494aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Cardiolipin synthase n=178 Tax=Clostridium difficile RepID=C9XRZ3_CLODC
cardiolipin synthase
64_010_scaffold_98_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22508..23278
DNA (771bp) protein (257aa)
Formate/nitrite transporter n=171 Tax=Clostridium difficile RepID=G6B9A1_CLODI
formate/nitrite transporter
Formate/nitrite transporter {ECO:0000313|EMBL:EHJ29068.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_98_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23512..24465
DNA (954bp) protein (318aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=6 Tax=Clostridium difficile RepID=D5Q7B3_CLODI
64_010_scaffold_98_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24469..25182
DNA (714bp) protein (238aa)
PHP domain protein n=184 Tax=Clostridium difficile RepID=T3G4J2_CLODC
phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:CKG74782.1}; Putative phosphoesterase {ECO:0000313|EMBL:CEK00110.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_98_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25213..26070
DNA (858bp) protein (286aa)
UPF0042 nucleotide-binding protein CD630_34000 n=202 Tax=Clostridium difficile RepID=Y3400_CLOD6
hypothetical protein; K06958 UPF0042 nucleotide-binding protein
Nucleotide-binding protein QCK_3618 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_010_scaffold_98_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26082..27188
DNA (1107bp) protein (369aa)
Putative gluconeogenesis factor n=173 Tax=Clostridium difficile RepID=C9XRY8_CLODC
hypothetical protein
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_98_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27257..27682
DNA (426bp) protein (142aa)
Hydrolase, NUDIX family n=205 Tax=Clostridium difficile RepID=D5Q7B7_CLODI
DNA repair protein
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CCK95892.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
64_010_scaffold_98_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27699..28646
DNA (948bp) protein (316aa)
Putative sporulation transcription regulator WhiA n=198 Tax=Clostridium difficile RepID=WHIA_CLOD6
hypothetical protein; K09762 hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_010_scaffold_98_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28803..32372
DNA (3570bp) protein (1190aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
dnaE; DNA polymerase III DnaE; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III alpha subunit n=141 Tax=Clostridium difficile RepID=C9XRY5_CLODC
64_010_scaffold_98_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32581..33540
DNA (960bp) protein (320aa)
pfkA; 6-phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11]
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
6-phosphofructokinase n=204 Tax=Clostridium difficile RepID=K6PF_CLOD6
64_010_scaffold_98_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33592..35352
DNA (1761bp) protein (587aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
pykF; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=125 Tax=Clostridium difficile RepID=T3G1D8_CLODC
64_010_scaffold_98_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35527..37161
DNA (1635bp) protein (545aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (Uracil-5-)-methyltransferase RumA n=4 Tax=Clostridium difficile RepID=T2U0A9_CLODI
Fusion of rumA/CD3393 and CD1844A {ECO:0000313|EMBL:CEK00100.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_98_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37180..37461
DNA (282bp) protein (94aa)
Putative membrane protein Tn1549-like,CTn5-Orf1 n=2 Tax=Clostridium difficile RepID=Q187F6_CLOD6
hypothetical protein
Putative membrane protein Tn1549-like,CTn5-Orf1 {ECO:0000313|EMBL:CAJ68717.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_98_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37502..38020
DNA (519bp) protein (173aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2TZ23_CLODI
hypothetical protein
Putative conjugative transposon protein Tn1549-like, CTn5-Orf2 {ECO:0000313|EMBL:CAJ68718.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_98_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38121..39131
DNA (1011bp) protein (337aa)
Putative conjugative transposon protein Tn1549-like, CTn5-Orf3 n=4 Tax=Clostridium difficile RepID=Q187F9_CLOD6
conjugative transposon protein
Conjugative transposon protein {ECO:0000313|EMBL:CKH14341.1}; Putative conjugative transposon proteinTn1549-like, CTn5-Orf3 {ECO:0000313|EMBL:CEK00097.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_98_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39133..39618
DNA (486bp) protein (162aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2U206_CLODI
conjugative transposon protein
Putative ATPase of the AAA superfamily {ECO:0000313|EMBL:CKH14367.1}; Putative conjugative transposon proteinTn1549-like, CTn5-Orf4 {ECO:0000313|EMBL:CEK00096.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_98_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39615..41396
DNA (1782bp) protein (594aa)
TraG/TraD family protein n=24 Tax=Clostridium difficile RepID=G6B3U9_CLODI
TRAG family protein {ECO:0000313|EMBL:CKH14388.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conjugal transfer protein
Displaying items 1-30 of 52 in total

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