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64_010_scaffold_305

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_305_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(432..572)
DNA (141bp) protein (47aa)
Uncharacterized protein n=153 Tax=Clostridium difficile RepID=T3IGQ8_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQE69685.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
64_010_scaffold_305_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(832..1992)
DNA (1161bp) protein (387aa)
Cell surface protein {ECO:0000313|EMBL:CKH71064.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH71064.1};; Cwp27 {ECO:0000313|EMBL:AFV73938.1}; Putative cell wall binding protein cwp27 {ECO:0000313|EMBL:CEJ96964.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cell wall binding repeat 2 family protein n=27 Tax=Clostridium difficile RepID=T3IFA7_CLODC
cell surface protein
64_010_scaffold_305_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2163..2366)
DNA (204bp) protein (68aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XK96_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31692.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_010_scaffold_305_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2453..3487)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=26 Tax=Clostridium difficile RepID=T3IE00_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH71126.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96962.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_305_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3522..3686)
DNA (165bp) protein (55aa)
Uncharacterized protein n=34 Tax=Clostridium difficile RepID=T3IFC4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ96961.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_305_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4010..5365)
DNA (1356bp) protein (452aa)
Putative tRNA (Uracil-5-)-methyltransferase {ECO:0000313|EMBL:CCL31549.1}; EC=2.1.1.35 {ECO:0000313|EMBL:CCL31549.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=34 Tax=Clostridium difficile RepID=T3IH00_CLODC
putative tRNA (uracil-5-)-methyltransferase
64_010_scaffold_305_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5389..6111)
DNA (723bp) protein (241aa)
RNA pseudouridine synthase (EC:4.2.1.70); K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Pseudouridine synthase n=5 Tax=Clostridium difficile RepID=T3IKA2_CLODC
64_010_scaffold_305_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6111..6440)
DNA (330bp) protein (110aa)
Uncharacterized protein n=134 Tax=Clostridium difficile RepID=T3IJ49_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ67225.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_305_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6770..7696
DNA (927bp) protein (309aa)
fba; fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
Fructose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:CEJ96921.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CEJ96921.1};; Putative fructose-bisphosphate aldolase {ECO:0000313|EMBL:CKH72147.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CKH72147.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Fructose-1,6-bisphosphate aldolase, class II n=26 Tax=Clostridium difficile RepID=T3IDZ7_CLODC
64_010_scaffold_305_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7831..9462)
DNA (1632bp) protein (544aa)
Sensory box protein n=185 Tax=Clostridium difficile RepID=C9XK89_CLODC
sigma-54-dependent transcriptional regulator
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CCL31432.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
64_010_scaffold_305_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9945..10982)
DNA (1038bp) protein (346aa)
Electron transfer flavoFAD-binding domain protein n=214 Tax=Clostridium difficile RepID=C9XK88_CLODC
etfA1; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:EHJ34272.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
64_010_scaffold_305_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11001..11786)
DNA (786bp) protein (262aa)
Electron transfer flavodomain protein n=195 Tax=Clostridium difficile RepID=C9XK87_CLODC
etfB1; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EHJ31916.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_305_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11819..12952)
DNA (1134bp) protein (378aa)
acdB; acyl-CoA dehydrogenase; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1]
Acyl-CoA dehydrogenase, short-chain specific {ECO:0000313|EMBL:CAJ67220.1}; EC=1.3.99.- {ECO:0000313|EMBL:CAJ67220.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Acyl-CoA dehydrogenase, N-terminal domain protein n=188 Tax=Clostridium difficile RepID=C9XK86_CLODC
64_010_scaffold_305_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13000..14127)
DNA (1128bp) protein (376aa)
2-hydroxyglutaryl-CoA dehydratase, D-component family protein n=193 Tax=Clostridium difficile RepID=T3IKD5_CLODC
hadC; subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
2-hydroxyglutaryl-CoA dehydratase, D-component family protein {ECO:0000313|EMBL:EQI93991.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
64_010_scaffold_305_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14127..15353)
DNA (1227bp) protein (409aa)
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase n=209 Tax=Clostridium difficile RepID=C9XK84_CLODC
hadB; oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase subunit
R-phenyllactate dehydratase, medium subunit {ECO:0000313|EMBL:EHJ34276.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
64_010_scaffold_305_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15368..16168)
DNA (801bp) protein (267aa)
Activator of 2-hydroxyisocaproyl-CoA dehydratase n=214 Tax=Clostridium difficile RepID=C9XK83_CLODC
hadI; activator of 2-hydroxyisocaproyl-CoA dehydratase
Activator of 2-hydroxyisocaproyl-CoA dehydratase {ECO:0000313|EMBL:CBE02100.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_010_scaffold_305_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16207..17406)
DNA (1200bp) protein (400aa)
CoA-transferase III family protein n=210 Tax=Clostridium difficile RepID=C9XK82_CLODC
hadA; isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase
CoA-transferase III family protein {ECO:0000313|EMBL:EQG78065.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_305_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18083..19081
DNA (999bp) protein (333aa)
ldhA; (R)-2-hydroxyisocaproate dehydrogenase; K03778 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase {ECO:0000313|EMBL:EQG77596.1}; EC=1.1.1.28 {ECO:0000313|EMBL:EQG77596.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
(R)-2-hydroxyisocaproate dehydrogenase n=203 Tax=Clostridium difficile RepID=C9XK81_CLODC
64_010_scaffold_305_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19452..19970
DNA (519bp) protein (173aa)
ECF-type riboflavin transporter, S component family protein n=210 Tax=Clostridium difficile RepID=T3IKE8_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31924.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
64_010_scaffold_305_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19997..20593
DNA (597bp) protein (199aa)
Radical SAM , TatD family-associated domain protein n=14 Tax=Clostridium difficile RepID=T3IJ90_CLODC
radical SAM superfamily protein
Putative radical SAM-family protein {ECO:0000313|EMBL:CEJ96910.1}; Radical SAM protein {ECO:0000313|EMBL:CKH72551.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_305_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20672..22210)
DNA (1539bp) protein (513aa)
Asparagine synthetase {ECO:0000313|EMBL:CKH72576.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CKH72576.1};; Asparagine synthetase [glutamine-hydrolyzing] {ECO:0000313|EMBL:CEJ96909.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CEJ96909.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
asparagine synthetase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthetase n=22 Tax=Clostridium difficile RepID=Q188I0_CLOD6
64_010_scaffold_305_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22188..22457)
DNA (270bp) protein (90aa)
Uncharacterized protein n=57 Tax=Clostridium difficile RepID=F3Y626_CLOD6
Uncharacterised protein {ECO:0000313|EMBL:CKH72607.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96908.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_305_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22838..23674)
DNA (837bp) protein (279aa)
Transcription antiterminator, PTS operon regulator n=55 Tax=Clostridium difficile RepID=Q18DC6_CLOD6
bglG; beta-glucoside bgl operon transcription antiterminator
Beta-glucoside bgl operon transcription antiterminator {ECO:0000313|EMBL:CKH72639.1}; Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ96907.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_305_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23662..25164)
DNA (1503bp) protein (501aa)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CKH72673.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CKH72673.1};; 6-phospho-beta-glucosidase, bglA {ECO:0000313|EMBL:CEJ96906.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CEJ96906.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
bglA; 6-phospho-beta-glucosidase (EC:3.2.1.86); K01223 6-phospho-beta-glucosidase [EC:3.2.1.86]
6-phospho-beta-glucosidase n=37 Tax=Clostridium difficile RepID=Q18DC7_CLOD6
64_010_scaffold_305_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25167..27029)
DNA (1863bp) protein (621aa)
PTS system beta-glucoside-specific transporter subunit IIABC {ECO:0000313|EMBL:CKH72708.1}; PTS system, beta-glucoside-specific IIABCcomponent {ECO:0000313|EMBL:CEJ96905.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CEJ96905.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
bglF; PTS system beta-glucoside-specific transporter subunit IIABC (EC:2.7.1.69); K02755 PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; K02756 PTS system, beta-glucosides-specific IIB component [EC:2.7.1.69]; K02757 PTS system, beta-glucosides-specific IIC component
PTS system, beta-glucoside-specific IIABC component n=4 Tax=Clostridium difficile RepID=Q18DC5_CLOD6
Displaying 25 items

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