ggKbase home page

64_010_scaffold_349

Search features with annotation key words

Displaying 19 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_349_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(313..1152)
DNA (840bp) protein (280aa)
3D domain protein n=123 Tax=Clostridium difficile RepID=C9XMK6_CLODC
hypothetical protein
Putative hydrolase {ECO:0000313|EMBL:CCL22819.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_010_scaffold_349_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1401..2075)
DNA (675bp) protein (225aa)
ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Uracil-DNA glycosylase n=205 Tax=Clostridium difficile RepID=UNG_CLOD6
64_010_scaffold_349_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2112..2483)
DNA (372bp) protein (124aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=T3IPI1_CLODC
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EQG76920.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_349_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2550..3608
DNA (1059bp) protein (353aa)
ApbE family protein n=47 Tax=Clostridium difficile RepID=T3IMW6_CLODC
hypothetical protein; K03734 thiamine biosynthesis lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CAJ69370.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_349_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3799..4977)
DNA (1179bp) protein (393aa)
aminotransferase; K14155 cystathione beta-lyase [EC:4.4.1.8]
Aminotransferase {ECO:0000313|EMBL:CKH33975.1}; EC=4.4.1.8 {ECO:0000313|EMBL:CKH33975.1};; Putative aminotransferase {ECO:0000313|EMBL:CEJ99106.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
C-S lyase family protein n=27 Tax=Clostridium difficile RepID=T3GIS7_CLODC
64_010_scaffold_349_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5031..6095)
DNA (1065bp) protein (355aa)
Xaa-Pro dipeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Putative Xaa-Pro aminopeptidase, M24 family {ECO:0000313|EMBL:CEJ99107.1}; EC=3.4.13.9 {ECO:0000313|EMBL:CEJ99107.1};; Xaa-Pro dipeptidase {ECO:0000313|EMBL:CKH34007.1}; EC=3.4.-.- {ECO:0000313|EMBL:CKH34007.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Metallopeptidase M24 family protein n=44 Tax=Clostridium difficile RepID=T3GGG4_CLODC
64_010_scaffold_349_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6200..7462)
DNA (1263bp) protein (421aa)
Fructose-like permease IIC component 1 n=180 Tax=Clostridium difficile RepID=T3GET4_CLODC
PTS system transporter subunit IIC; K11203 PTS system, fructose-specific IIC-like component
Fructose-like permease IIC component 1 {ECO:0000313|EMBL:EQH98693.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
64_010_scaffold_349_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7487..7804)
DNA (318bp) protein (106aa)
PTS system transporter subunit IIB; K11202 PTS system, fructose-specific IIB-like component [EC:2.7.1.69]
PTS system, fructose-like IIB component {ECO:0000313|EMBL:CCK91295.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCK91295.1};; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
Fructose-like phosphotransferase enzyme IIB component 1 n=217 Tax=Clostridium difficile RepID=C9XML3_CLODC
64_010_scaffold_349_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7863..8318)
DNA (456bp) protein (152aa)
pts system transporter subunit IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS system, fructose subfamily, IIA component domain protein n=45 Tax=Clostridium difficile RepID=T3GI85_CLODC
PTS system, fructose-like IIA component {ECO:0000313|EMBL:CAJ69375.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_349_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8333..10222)
DNA (1890bp) protein (630aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=49 Tax=Clostridium difficile RepID=T3GIT1_CLODC
Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ99111.1}; Transcriptional antiterminator {ECO:0000313|EMBL:CKH34116.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
transcriptional antiterminator
64_010_scaffold_349_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10310..11671)
DNA (1362bp) protein (454aa)
Dipeptidase family protein n=52 Tax=Clostridium difficile RepID=T3GGG9_CLODC
peptidase
Putative peptidase, M20A family {ECO:0000313|EMBL:CEJ99112.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_349_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11844..12788
DNA (945bp) protein (315aa)
pmi; mannose-6-phosphate isomerase; K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]
Mannose-6-phosphate isomerase (Phosphomannose isomerase) (PMI) (Phosphohexomutase) {ECO:0000313|EMBL:CCL30729.1}; EC=5.3.1.8 {ECO:0000313|EMBL:CCL30729.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Mannose-6-phosphate isomerase n=180 Tax=Clostridium difficile RepID=C9XML7_CLODC
64_010_scaffold_349_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12907..15645)
DNA (2739bp) protein (913aa)
Sensor histidine kinase {ECO:0000313|EMBL:CKH34263.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKH34263.1};; Two-component sensor histidinekinase,sporulation-associated spo0A {ECO:0000313|EMBL:CEJ99114.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CEJ99114.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component sensor histidine kinase,sporulation-associated spo0A n=68 Tax=Clostridium difficile RepID=Q182H8_CLOD6
sensor histidine kinase
64_010_scaffold_349_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15750..17633)
DNA (1884bp) protein (628aa)
Selenocysteinyl-tRNA-specific translation factor n=184 Tax=Clostridium difficile RepID=Q182I0_CLOD6
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EQH98700.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
selB; selenocysteine-specific elongation factor; K03833 selenocysteine-specific elongation factor
64_010_scaffold_349_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17747..19150)
DNA (1404bp) protein (468aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
fdhA; selenocysteine synthase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Sec) selenium transferase n=48 Tax=Clostridium difficile RepID=T3GEQ5_CLODC
64_010_scaffold_349_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19177..20223)
DNA (1047bp) protein (349aa)
Selenide, water dikinase {ECO:0000255|HAMAP-Rule:MF_00625}; EC=2.7.9.3 {ECO:0000255|HAMAP-Rule:MF_00625};; Selenium donor protein {ECO:0000255|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000255|HAMAP-Rule:MF_00625}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
selD; selenide,water dikinase (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase n=27 Tax=Clostridium difficile RepID=SELD_CLOD6
64_010_scaffold_349_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20315..21019)
DNA (705bp) protein (235aa)
Competence ComEA helix-hairpin-helix repeat region domain protein n=45 Tax=Clostridium difficile RepID=C9XMM2_CLODC
comE; competence protein; K02237 competence protein ComEA
Competence protein ComEA {ECO:0000313|EMBL:CAJ69383.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_349_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21099..22388
DNA (1290bp) protein (430aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase (Putative sporulation-specific penicillin-binding protein) {ECO:0000313|EMBL:CAJ69384.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CAJ69384.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Serine-type D-Ala-D-Ala carboxypeptidase n=122 Tax=Clostridium difficile RepID=G6BZP4_CLODI
64_010_scaffold_349_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22515..22853)
DNA (339bp) protein (113aa)
Uncharacterized protein n=193 Tax=Clostridium difficile RepID=C9XMM4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98919.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Displaying 19 items

View Taxonomy