ggKbase home page

64_010_scaffold_106

Search features with annotation key words

Displaying items 1-30 of 78 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_106_1
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(136..303)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXS6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00684.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
64_010_scaffold_106_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(316..2142)
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKQ9_9CLOT
64_010_scaffold_106_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2743..3294
DNA (552bp) protein (184aa)
Cotf n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVP1_CLOSA
cotf
Cotf {ECO:0000313|EMBL:AGX43492.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
64_010_scaffold_106_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3346..3597)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU71805.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
GIY-YIG domain protein; K07461 putative endonuclease
64_010_scaffold_106_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3791..5659)
DNA (1869bp) protein (623aa)
ABC-type transport system, multidrug-family ATP-binding/permease {ECO:0000313|EMBL:CCK90987.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCK90987.1};; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
ABC transporter, ATP-binding protein n=5 Tax=Clostridium difficile RepID=D5Q387_CLODI
ABC transporter ATP-binding/permease protein
64_010_scaffold_106_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5649..7880)
DNA (2232bp) protein (744aa)
ABC transporter family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D8P6_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQF24279.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial
64_010_scaffold_106_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7901..8380)
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=7 Tax=Clostridium difficile RepID=G6BC21_CLODI
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EHJ26827.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
MarR family transcriptional regulator
64_010_scaffold_106_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8720..9721)
DNA (1002bp) protein (334aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ilvC; ketol-acid reductoisomerase IlvC (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1P5_9CLOT
64_010_scaffold_106_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9741..11414)
DNA (1674bp) protein (558aa)
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EHI97228.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EHI97228.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBQ1_9CLOT
64_010_scaffold_106_10
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11442..13100)
DNA (1659bp) protein (553aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ilvD1; dihydroxy-acid dehydratase IlvD (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKN7_9CLOT
64_010_scaffold_106_11
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13104..14186)
DNA (1083bp) protein (361aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
leuB; 3-isopropylmalate dehydrogenase LeuB (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HED9_9CLOT
64_010_scaffold_106_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14203..14688)
DNA (486bp) protein (162aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01032}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01032};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01032}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Clostridium botulinum B RepID=LEUD_CLOBB
64_010_scaffold_106_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14702..15961)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
leuC2; 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=2 Tax=Clostridium butyricum RepID=M8J5X1_CLOBU
64_010_scaffold_106_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15978..17573)
DNA (1596bp) protein (532aa)
alpha-isopropylmalate/homocitrate synthase family transferase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:ABR32403.1}; EC=2.3.3.13 {ECO:0000313|EMBL:ABR32403.1};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPX3_CLOB8
64_010_scaffold_106_15
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17602..18102)
DNA (501bp) protein (167aa)
acetolactate synthase small subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FZY0_CLOPA
Acetolactate synthase {ECO:0000313|EMBL:ETD69263.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
64_010_scaffold_106_16
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18779..20128)
DNA (1350bp) protein (450aa)
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase {ECO:0000255|HAMAP-Rule:MF_01554}; EC=5.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01554};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Phosphoglucosamine mutase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=GLMM_CLOB8
64_010_scaffold_106_17
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20212..20517)
DNA (306bp) protein (102aa)
TrpR like protein, YerC/YecD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML31_CLOSA
TrpR like protein, YerC/YecD
TrpR-like protein YerC/YecD {ECO:0000313|EMBL:ENZ00709.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
64_010_scaffold_106_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20606..21436)
DNA (831bp) protein (277aa)
HTH DNA-binding protein n=2 Tax=Clostridium botulinum B RepID=B2TIN5_CLOBB
HTH DNA-binding protein
HTH DNA-binding protein {ECO:0000313|EMBL:ACD24168.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
64_010_scaffold_106_19
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21649..22716)
DNA (1068bp) protein (356aa)
Probable butyrate kinase {ECO:0000256|HAMAP-Rule:MF_00542}; Short=BK {ECO:0000256|HAMAP-Rule:MF_00542};; EC=2.7.2.7 {ECO:0000256|HAMAP-Rule:MF_00542};; Branched-chain carboxylic acid kinase {ECO:0000256|HAMAP-Rule:MF_00542}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
buk1; butyrate kinase Buk (EC:2.7.2.7)
Probable butyrate kinase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKS3_9CLOT
64_010_scaffold_106_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22743..23651)
DNA (909bp) protein (303aa)
ptb; phosphate butyryltransferase; K00634 phosphate butyryltransferase [EC:2.3.1.19]
Phosphate butyryltransferase {ECO:0000313|EMBL:ACD22165.1}; EC=2.3.1.19 {ECO:0000313|EMBL:ACD22165.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Phosphate butyryltransferase n=4 Tax=Clostridium botulinum RepID=B2TIN3_CLOBB
64_010_scaffold_106_21
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23815..25416)
DNA (1602bp) protein (534aa)
Putative Pyridine nucleotide-disulphide oxidoreductase family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EPI3_9CLOT
Putative Pyridine nucleotide-disulphide oxidoreductase family protein {ECO:0000313|EMBL:CDG03052.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein; K07137
64_010_scaffold_106_22
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25511..26731)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LMM0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF54055.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
64_010_scaffold_106_23
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26701..27555)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG03050.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
64_010_scaffold_106_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27730..28716
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKG5_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41304.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
64_010_scaffold_106_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28779..29348
DNA (570bp) protein (190aa)
spore-cortex-lytic enzyme, sleb; K01449 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Spore-cortex-lytic enzyme, sleb n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UT36_CLOBO
Spore-cortex-lytic enzyme, sleb {ECO:0000313|EMBL:EES50540.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
64_010_scaffold_106_26
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29375..30547)
DNA (1173bp) protein (391aa)
iadA; isoaspartyl dipeptidase IadA (EC:3.4.19.-)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Isoaspartyl dipeptidase IadA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPC8_CLOSA
64_010_scaffold_106_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30563..31792)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0003711B48
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL08591.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
64_010_scaffold_106_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31793..32323)
DNA (531bp) protein (177aa)
Chromate ion transporter (CHR) family chromate transporter n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H679_9CLOT
Chromate transporter {ECO:0000313|EMBL:KJU71474.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
chromate transport protein; K07240 chromate transporter
64_010_scaffold_106_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32308..32859)
DNA (552bp) protein (184aa)
chromate transporter n=1 Tax=Clostridium botulinum RepID=UPI00030E2D33
Chromate transporter {ECO:0000313|EMBL:KJU71475.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
chrA; chromate transport protein; K07240 chromate transporter
64_010_scaffold_106_30
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33112..34731)
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ptsP; phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9); K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8P7_9CLOT
Displaying items 1-30 of 78 in total

View Taxonomy