ggKbase home page

64_010_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_234_1
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(121..534)
DNA (414bp) protein (138aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QMZ6_9CLOT
64_010_scaffold_234_2
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(524..1369)
DNA (846bp) protein (282aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094332}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094309};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094320}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FCC1_9CLOT
64_010_scaffold_234_3
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1380..2204)
DNA (825bp) protein (275aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KQK9_9CLOT
64_010_scaffold_234_4
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2208..3065)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QLS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28939.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
64_010_scaffold_234_5
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3482..4462)
DNA (981bp) protein (327aa)
Band 7 protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SR57_CLOC7
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ADL50345.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
64_010_scaffold_234_6
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4475..5533)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P060_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ03041.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
64_010_scaffold_234_7
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5547..6176)
DNA (630bp) protein (210aa)
Phage shock protein A n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NEY9_9FIRM
Phage shock protein A {ECO:0000313|EMBL:CDF11146.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
phage shock protein A, PspA
64_010_scaffold_234_8
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6330..7103)
DNA (774bp) protein (258aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D627_9FIRM
bceA; ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI91773.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
64_010_scaffold_234_9
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7110..8393)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EBE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI91772.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
permease
64_010_scaffold_234_10
unknown

Not on your lists

8524..8847
DNA (324bp) protein (108aa)

This feature has no annotations

64_010_scaffold_234_11
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8968..9552
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99012.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
LemA family protein; K03744 LemA protein
64_010_scaffold_234_12
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9555..10337
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LUN6_CLOB8
hypothetical protein; K06872 uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:ABR34066.1}; Flags: Precursor;; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
64_010_scaffold_234_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10384..11772)
DNA (1389bp) protein (463aa)
methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000287C0D0
Uncharacterized protein {ECO:0000313|EMBL:KJU72450.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
64_010_scaffold_234_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11879..12196)
DNA (318bp) protein (106aa)
Uncharacterized protein n=4 Tax=Clostridium botulinum RepID=B2TPQ4_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07835.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
64_010_scaffold_234_15
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12203..12754)
DNA (552bp) protein (184aa)
Reverse rubrerythrin-2 {ECO:0000313|EMBL:CDM70180.1}; EC=1.11.1.1 {ECO:0000313|EMBL:CDM70180.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
rbr3B: reverse rubrerythrin-2 (EC:1.11.1.1)
Rbr3B: reverse rubrerythrin-2 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MNK5_9CLOT
64_010_scaffold_234_16
unknown

Not on your lists

comp(12886..13104)
DNA (219bp) protein (73aa)

This feature has no annotations

64_010_scaffold_234_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13222..14202
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V4I9_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL09493.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
64_010_scaffold_234_18
unknown

Not on your lists

comp(14226..14768)
DNA (543bp) protein (181aa)

This feature has no annotations

64_010_scaffold_234_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14862..15293)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVT6_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43552.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
64_010_scaffold_234_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15435..15779
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98071.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
macrophage migration inhibitory factor family protein
64_010_scaffold_234_21
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15828..17312)
DNA (1485bp) protein (495aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30]
Glycerol kinase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QDD9_9CLOT
64_010_scaffold_234_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17418..18848)
DNA (1431bp) protein (477aa)
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Adenylosuccinate lyase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SSF2_CLOPS
64_010_scaffold_234_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19275..19535)
DNA (261bp) protein (87aa)
HPr family phosphocarrier n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPN2_CLOSA
HPr family phosphocarrier
HPr family phosphocarrier {ECO:0000313|EMBL:AGX42458.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
64_010_scaffold_234_24
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19663..19923)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=2 Tax=Clostridium RepID=R9CDY0_9CLOT
Putative Stage V sporulation protein S {ECO:0000313|EMBL:CDG01644.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
stage V sporulation protein S; K06416 stage V sporulation protein S
64_010_scaffold_234_25
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20101..21642)
DNA (1542bp) protein (514aa)
rny; ribonuclease Y (EC:3.1.-.-)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease Y n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS45_CLOSA
64_010_scaffold_234_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21986..23083)
DNA (1098bp) protein (366aa)
Protein recA n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H316_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
recA; recombinase A; K03553 recombination protein RecA
64_010_scaffold_234_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23302..23892)
DNA (591bp) protein (197aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Clostridium botulinum E RepID=B2V4I2_CLOBA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KIL09486.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
64_010_scaffold_234_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23876..25213)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1561 species="Bacteria; Firmi
MiaB-like tRNA modifying protein YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Clostridium butyricum RepID=B1QUW4_CLOBU
64_010_scaffold_234_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25292..27664)
DNA (2373bp) protein (791aa)
cell division protein FtsK n=1 Tax=Clostridium beijerinckii RepID=UPI0002ED1E22
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:AIY82298.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
64_010_scaffold_234_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27745..28470)
DNA (726bp) protein (242aa)
Clp protease n=3 Tax=Clostridium butyricum RepID=B1QUW6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36045.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
peptidase S14, ClpP
Displaying items 1-30 of 38 in total

View Taxonomy