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64_010_scaffold_291

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_291_1
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(255..725)
DNA (471bp) protein (157aa)
SsrA-binding protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK93_9CLOT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
smpB; SsrA-binding protein; K03664 SsrA-binding protein
64_010_scaffold_291_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(762..2990)
DNA (2229bp) protein (743aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
rnr; ribonuclease R (EC:3.1.-.-); K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H202_9CLOT
64_010_scaffold_291_3
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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3289..5112
DNA (1824bp) protein (608aa)
YD repeat-containing protein n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MN26_CALBD
YD repeat-containing protein
YD repeat-containing protein {ECO:0000313|EMBL:ACM59482.1}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
64_010_scaffold_291_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5209..7233)
DNA (2025bp) protein (675aa)
hppA; membrane-bound proton-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129, ECO:0000313|EMBL:AIY80720.1};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UY76_CLOBO
64_010_scaffold_291_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7385..7615)
DNA (231bp) protein (77aa)
Preprotein translocase, SecG subunit n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HCU3_9CLOT
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:AIY83699.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
preprotein translocase, SecG subunit
64_010_scaffold_291_6
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7789..9081)
DNA (1293bp) protein (431aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
eno2; enolase Eno (EC:4.2.1.11)
Enolase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BWK9_9CLOT
64_010_scaffold_291_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9233..9859)
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TPW6_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD24697.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
64_010_scaffold_291_8
unknown

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10036..10254
DNA (219bp) protein (73aa)

This feature has no annotations

64_010_scaffold_291_9
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10238..11485)
DNA (1248bp) protein (416aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
sensor histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T970_CLOSG
64_010_scaffold_291_10
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11485..12171)
DNA (687bp) protein (229aa)
DNA-binding response regulator n=2 Tax=Clostridium botulinum RepID=B1IFA9_CLOBK
Two-component response regulator {ECO:0000313|EMBL:CDM70195.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
DNA-binding response regulator
64_010_scaffold_291_11
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12558..15086)
DNA (2529bp) protein (843aa)
Putative ABC transporter, permease protein n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3L276_CLOB6
Uncharacterized protein {ECO:0000313|EMBL:CDM70196.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
putative ABC transporter permease; K02004 putative ABC transport system permease protein
64_010_scaffold_291_12
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15098..15763)
DNA (666bp) protein (222aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q893J7_CLOTE
Putative ABC transporter ATP-binding protein TM_0352 {ECO:0000313|EMBL:CDM70197.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
64_010_scaffold_291_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15911..17446)
DNA (1536bp) protein (512aa)
gpmI; phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=Clostridium botulinum B RepID=B2TPW7_CLOBB
64_010_scaffold_291_14
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17658..18404)
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=4 Tax=Clostridium chauvoei RepID=S6FP68_9CLOT
64_010_scaffold_291_15
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18638..19816)
DNA (1179bp) protein (393aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
pgk; phosphoglycerate kinase Pgk (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KME1_9CLOT
64_010_scaffold_291_16
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19926..20936)
DNA (1011bp) protein (337aa)
gap; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.-); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=4 Tax=Clostridium botulinum RepID=B2TPX5_CLOBB
64_010_scaffold_291_17
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21000..22037)
DNA (1038bp) protein (346aa)
Putative Transcriptional regulator n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EMV6_9CLOT
Putative Transcriptional regulator {ECO:0000313|EMBL:CDG02517.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
transcriptional regulator; K05311 central glycolytic genes regulator
64_010_scaffold_291_18
unknown

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22275..22400
DNA (126bp) protein (42aa)

This feature has no annotations

64_010_scaffold_291_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22362..23744)
DNA (1383bp) protein (461aa)
RNA polymerase sigma-54 factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H6T4_9CLOT
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:AIY84149.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor
64_010_scaffold_291_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23883..24731)
DNA (849bp) protein (283aa)
DegV family EDD domain-containing protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XSB3_9CLOT
DegV domain-containing protein {ECO:0000313|EMBL:KJU71171.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
DegV family protein
64_010_scaffold_291_21
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24752..25213)
DNA (462bp) protein (154aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
tRNA/rRNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y340_9CLOT
64_010_scaffold_291_22
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25321..26328)
DNA (1008bp) protein (336aa)
hypothetical protein; K03716 spore photoproduct lyase [EC:4.1.99.14]
Putative Spore photoproduct lyase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EMW1_9CLOT
Putative Spore photoproduct lyase {ECO:0000313|EMBL:CDG02522.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
64_010_scaffold_291_23
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26360..27232)
DNA (873bp) protein (291aa)
Cof-like hydrolase n=1 Tax=Clostridium colicanis 209318 RepID=N9WI54_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:ENZ02585.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
HAD superfamily hydrolase; K07024
64_010_scaffold_291_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27252..28700)
DNA (1449bp) protein (483aa)
Vancomycin B-type resistance protein VanW n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UY29_CLOBA
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:AIY83741.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
vancomycin B-type resistance protein VanW
Displaying 24 items

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