ggKbase home page

64_010_scaffold_294

Search features with annotation key words

Displaying items 1-30 of 36 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_294_1
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BDP9_9RHOB
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
64_010_scaffold_294_trna_3
unknown

Not on your lists

comp(160..232)
DNA (73bp)
transferRNA Thr
64_010_scaffold_294_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(309..950)
DNA (642bp) protein (214aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:KIL08524.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KIL08524.1};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
RNA polymerase sigma-H factor n=2 Tax=Clostridium botulinum E RepID=B2UY94_CLOBA
sigH; RNA polymerase factor sigma-70; K03091 RNA polymerase sporulation-specific sigma factor
64_010_scaffold_294_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(995..1534)
DNA (540bp) protein (180aa)
Putative Tetracycline resistance protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F308_9CLOT
YacP-like NYN domain protein {ECO:0000313|EMBL:AIY84968.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tetracycline resistance protein; K06962
64_010_scaffold_294_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1548..2363)
DNA (816bp) protein (272aa)
yacO; putative TrmH family tRNA/rRNA methyltransferase YacO (EC:2.1.1.-)
Putative Probable tRNA/rRNA methyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUT5_9CLOT
RNA methyltransferase {ECO:0000313|EMBL:KJU70552.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
64_010_scaffold_294_5
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2377..2799)
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H643_9CLOT
64_010_scaffold_294_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2852..4264)
DNA (1413bp) protein (471aa)
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
Cysteine--tRNA ligase n=3 Tax=Clostridium botulinum RepID=SYC_CLOBA
64_010_scaffold_294_7
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4281..5996)
DNA (1716bp) protein (572aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QD37_9CLOT
64_010_scaffold_294_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6319..6999)
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F303_9CLOT
64_010_scaffold_294_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7012..8106)
DNA (1095bp) protein (365aa)
PilT protein domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYX6_9CLOT
PilT protein domain protein {ECO:0000313|EMBL:EHI97105.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PilT domain-containing protein
64_010_scaffold_294_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8387..8779
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIF2_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY80831.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
64_010_scaffold_294_11
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8835..9899)
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=1 Tax=Clostridium colicanis 209318 RepID=N9XM80_9CLOT
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
disA; DNA integrity scanning protein DisA
64_010_scaffold_294_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9915..11282)
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Clostridium colicanis 209318 RepID=N9XY13_9CLOT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
64_010_scaffold_294_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11512..12240)
DNA (729bp) protein (243aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
nagB; glucosamine-6-phosphate deaminase NagB (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HBL1_9CLOT
64_010_scaffold_294_14
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12231..12959)
DNA (729bp) protein (243aa)
Putative Transcriptional regulator, GntR family n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUR9_9CLOT
Putative Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDG02970.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
64_010_scaffold_294_15
unknown

Not on your lists

13089..13256
DNA (168bp) protein (56aa)
hypothetical protein
64_010_scaffold_294_16
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13382..13609
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NUF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK32496.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
64_010_scaffold_294_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13749..13976)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIE7_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:CDM68242.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
hypothetical protein
64_010_scaffold_294_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13979..14917)
DNA (939bp) protein (313aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=498213 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Okra / Type B1).;"
Thioredoxin reductase n=2 Tax=Clostridium botulinum RepID=B1IJD7_CLOBK
64_010_scaffold_294_19
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15066..17510)
DNA (2445bp) protein (815aa)
ATPase AAA-2 domain protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPN3_CLOB8
ATPase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
ATPase AAA-2 domain protein {ECO:0000313|EMBL:ABR32313.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
64_010_scaffold_294_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17532..18533)
DNA (1002bp) protein (334aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
ATP:guanido phosphotransferase (EC:2.7.3.-); K00936 [EC:2.7.3.-]
Putative ATP:guanido phosphotransferase CLL_A0206 n=2 Tax=Clostridium botulinum B RepID=Y206_CLOBB
64_010_scaffold_294_21
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18514..19056)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NAB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK32457.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
McsA protein
64_010_scaffold_294_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19068..19523)
DNA (456bp) protein (152aa)
Transcriptional regulator CtsR n=2 Tax=Clostridium botulinum B RepID=B2TIE2_CLOBB
CtsR family transcriptional regulator; K03708 transcriptional regulator CtsR
Transcriptional regulator {ECO:0000313|EMBL:CDH89165.1}; Transcriptional regulator CtsR {ECO:0000313|EMBL:ACD22633.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
64_010_scaffold_294_23
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19679..20338
DNA (660bp) protein (220aa)
Zn-dependent hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKT0_CLOSA
Zn-dependent hydrolase of the metallo-beta-lactamase superfamily
Zinc-dependent hydrolase {ECO:0000313|EMBL:AJG96833.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
64_010_scaffold_294_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20380..20550)
DNA (171bp) protein (57aa)
Ferredoxin n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK77_CLOSA
ferredoxin
Ferredoxin {ECO:0000313|EMBL:AGX41219.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
64_010_scaffold_294_25
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20647..20853)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XM96_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KAJ49948.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
hypothetical protein
64_010_scaffold_294_26
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20866..21771)
DNA (906bp) protein (302aa)
Stage 0 sporulation protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FPW8_CLOPA
PSP1 domain-containing protein {ECO:0000313|EMBL:AJG96830.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
PSP1 domain-containing protein
64_010_scaffold_294_27
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21774..22703)
DNA (930bp) protein (310aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
Putative DNA polymerase III subunits gamma and tau n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FD47_9CLOT
Putative DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:CDG02958.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
64_010_scaffold_294_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22724..23053)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q1W5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU70574.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
64_010_scaffold_294_29
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23136..23762)
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
tmk; thymidylate kinase Tmk (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Clostridium colicanis 209318 RepID=N9XZ04_9CLOT
Displaying items 1-30 of 36 in total

View Taxonomy