ggKbase home page

64_010_scaffold_348

Search features with annotation key words

Displaying items 1-30 of 31 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_348_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1383
DNA (1383bp) protein (461aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.86)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2Z9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97189.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
64_010_scaffold_348_2
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1464..2057
DNA (594bp) protein (198aa)
Peptidase M56 BlaR1 n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DT27_DESRL
peptidase M56 BlaR1
Peptidase M56 BlaR1 {ECO:0000313|EMBL:AEG61132.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
64_010_scaffold_348_3
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2180..2542
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBQ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ57444.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
64_010_scaffold_348_4
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(2528..2761)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RVN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC47066.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
64_010_scaffold_348_5
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2909..3469
DNA (561bp) protein (187aa)
Putative Transcriptional regulator, TetR family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F9T8_9CLOT
Putative Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:CDG01828.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
regulatory protein TetR
64_010_scaffold_348_6
unknown

Not on your lists

3568..4458
DNA (891bp) protein (297aa)

This feature has no annotations

64_010_scaffold_348_7
unknown

Not on your lists

4452..4634
DNA (183bp) protein (61aa)

This feature has no annotations

64_010_scaffold_348_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4680..5354
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EKR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01822.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
64_010_scaffold_348_9
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5472..6011
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UB41_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ56399.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
64_010_scaffold_348_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5980..6369
DNA (390bp) protein (130aa)
GntR family transcriptional regulator n=1 Tax=Clostridium botulinum RepID=UPI0002FF8FD1
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:AIY81489.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
GntR family transcriptional regulator; K07979 GntR family transcriptional regulator
64_010_scaffold_348_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6370..7263
DNA (894bp) protein (298aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVF2_CLOBO
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EES48053.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein
64_010_scaffold_348_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7247..8305
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LUM8_CLOB8
Putative membrane protein {ECO:0000313|EMBL:AIY83923.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
hypothetical protein
64_010_scaffold_348_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8455..8664
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TKZ0_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD24624.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
64_010_scaffold_348_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8761..9579)
DNA (819bp) protein (273aa)
AP endonuclease; K01151 deoxyribonuclease IV [EC:3.1.21.2]
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQE9_CLOPF
AP endonuclease {ECO:0000313|EMBL:EIA17257.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
64_010_scaffold_348_15
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9725..10435
DNA (711bp) protein (237aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F9M4_9CLOT
64_010_scaffold_348_16
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10446..10988
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EKK3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDM67428.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
hypothetical protein
64_010_scaffold_348_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11111..12010
DNA (900bp) protein (300aa)
Transcriptional regulator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T963_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:EKQ56393.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
RpiR family transcriptional regulator
64_010_scaffold_348_18
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12139..13008
DNA (870bp) protein (290aa)
short-chain dehydrogenase n=1 Tax=Clostridium sp. JC122 RepID=UPI000288ED77
Uncharacterized protein {ECO:0000313|EMBL:EOR20024.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
oxidoreductase, short chain dehydrogenase/reductase
64_010_scaffold_348_19
unknown

Not on your lists

13172..13282
DNA (111bp) protein (37aa)

This feature has no annotations

64_010_scaffold_348_20
unknown

Not on your lists

13397..13837
DNA (441bp) protein (147aa)

This feature has no annotations

64_010_scaffold_348_21
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13863..14393)
DNA (531bp) protein (177aa)
Putative Mn-containing catalase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EYC2_9CLOT
Putative Mn-containing catalase {ECO:0000313|EMBL:CDG01301.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
cotJC2; CotJC protein
64_010_scaffold_348_22
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14483..14626
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FS39_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD66227.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
64_010_scaffold_348_23
Exiguobacterium sibiricum, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14776..15288
DNA (513bp) protein (171aa)
zinc-binding CMP/dCMP deaminase; K01493 dCMP deaminase [EC:3.5.4.12]
CMP/dCMP deaminase zinc-binding n=1 Tax=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) RepID=B1YHM9_EXIS2
CMP/dCMP deaminase zinc-binding {ECO:0000313|EMBL:ACB61202.1}; TaxID=262543 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15).;"
64_010_scaffold_348_24
unknown

Not on your lists

15432..15695
DNA (264bp) protein (88aa)

This feature has no annotations

64_010_scaffold_348_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15747..17483)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98067.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein; K06147 ATP-binding cassette, subfamily B, bacterial
64_010_scaffold_348_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17485..19224)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98066.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein; K06147 ATP-binding cassette, subfamily B, bacterial
64_010_scaffold_348_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19440..20333
DNA (894bp) protein (298aa)
Radical SAM domain protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7TC71_CLOSG
Clostridium botulinum B2 450 B2_450_contig006, whole genome shotgun sequence {ECO:0000313|EMBL:KIS25315.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B2 450.;"
hypothetical protein
64_010_scaffold_348_28
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20355..21035
DNA (681bp) protein (227aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
RNA pseudouridylate synthase family protein; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Pseudouridine synthase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F7U7_9CLOT
64_010_scaffold_348_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21187..21339
DNA (153bp) protein (51aa)
Conserved domain protein n=4 Tax=Clostridium botulinum RepID=B2TS03_CLOBB
hypothetical protein
Putative zinc-binding domain protein {ECO:0000313|EMBL:AIY81993.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
64_010_scaffold_348_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21642..22292
DNA (651bp) protein (217aa)
Pentapeptide repeat protein n=2 Tax=Clostridium botulinum E RepID=B2V3M8_CLOBA
pentapeptide repeat-containing protein
Pentapeptide repeat protein {ECO:0000313|EMBL:EES48931.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Displaying items 1-30 of 31 in total

View Taxonomy