ggKbase home page

64_010_scaffold_356

Search features with annotation key words

Displaying 21 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_356_1
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(278..775)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Selenomonas artemidis F0399 RepID=E7N3Q1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWC92848.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
acetyltransferase
64_010_scaffold_356_2
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(775..1674)
DNA (900bp) protein (300aa)
Aldose 1-epimerase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAD7_ATOPD
Aldose 1-epimerase {ECO:0000313|EMBL:EWC92850.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
aldose 1-epimerase
64_010_scaffold_356_3
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1750..2730)
DNA (981bp) protein (327aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:EWC92930.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EWC92930.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
phosphate acetyltransferase; K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAD8_ATOPD
64_010_scaffold_356_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2969..4171
DNA (1203bp) protein (401aa)
UDP-galactopyranose mutase {ECO:0000313|EMBL:EWC92922.1}; EC=5.4.99.9 {ECO:0000313|EMBL:EWC92922.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
UDP-galactopyranose mutase (EC:5.4.99.9); K01854 UDP-galactopyranose mutase [EC:5.4.99.9]
UDP-galactopyranose mutase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAD9_ATOPD
64_010_scaffold_356_5
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4181..5215
DNA (1035bp) protein (345aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EWC92836.1}; EC=2.4.-.- {ECO:0000313|EMBL:EWC92836.1};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
Glycosyl transferase family 2 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE0_ATOPD
glycosyl transferase family protein
64_010_scaffold_356_6
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5749..6411)
DNA (663bp) protein (221aa)
Maf-like protein Apar_0649 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE1_ATOPD
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
maf protein; K06287 septum formation protein
64_010_scaffold_356_7
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6521..6706)
DNA (186bp) protein (62aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE2_ATOPD
4Fe-4S ferredoxin; K05337 ferredoxin
Divergent 4Fe-4S mono-cluster {ECO:0000313|EMBL:EWC95530.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_356_8
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6946..7476)
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Oribacterium RepID=G9WPN1_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EWC95505.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_356_9
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7486..8625)
DNA (1140bp) protein (380aa)
VanZ-like protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y503_9FIRM
VanZ-like protein {ECO:0000313|EMBL:ESL03157.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
hypothetical protein
64_010_scaffold_356_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8756..9169)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KV69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96182.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
64_010_scaffold_356_11
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9264..10592)
DNA (1329bp) protein (443aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EWC95579.1}; EC=2.1.1.- {ECO:0000313|EMBL:EWC95579.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE3_ATOPD
TrmA family RNA methyltransferase
64_010_scaffold_356_12
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10593..11642)
DNA (1050bp) protein (350aa)
Tryptophan--tRNA ligase {ECO:0000313|EMBL:EWC95519.1}; EC=6.1.1.2 {ECO:0000313|EMBL:EWC95519.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophanyl-tRNA synthetase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE4_ATOPD
64_010_scaffold_356_13
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11718..12452)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK53_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEE18041.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
hypothetical protein
64_010_scaffold_356_14
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12710..16093
DNA (3384bp) protein (1128aa)
Repeat protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK54_9ACTN
Repeat protein {ECO:0000313|EMBL:EEE18081.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
cell wall/surface repeat-containing protein
64_010_scaffold_356_15
unknown

Not on your lists

comp(16235..16444)
DNA (210bp) protein (70aa)

This feature has no annotations

64_010_scaffold_356_16
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16559..17356)
DNA (798bp) protein (266aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
pyruvate formate-lyase activating enzyme (EC:1.97.1.4); K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Pyruvate formate-lyase activating enzyme n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE5_ATOPD
64_010_scaffold_356_17
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17370..17621)
DNA (252bp) protein (84aa)
Formate C-acetyltransferase glycine radical n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE6_ATOPD
Glycine radical domain protein {ECO:0000313|EMBL:EWC92842.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
autonomous glycyl radical cofactor GrcA
64_010_scaffold_356_18
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17687..19843)
DNA (2157bp) protein (719aa)
formate acetyltransferase (EC:2.3.1.54); K00656 formate C-acetyltransferase [EC:2.3.1.54]
Formate acetyltransferase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE7_ATOPD
Formate C-acetyltransferase {ECO:0000313|EMBL:EWC95434.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_356_19
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20217..20798
DNA (582bp) protein (194aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAE9_ATOPD
64_010_scaffold_356_20
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20865..21755)
DNA (891bp) protein (297aa)
3-dehydroquinate dehydratase {ECO:0000256|SAAS:SAAS00027752}; EC=4.2.1.10 {ECO:0000256|SAAS:SAAS00027752};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
dehydroquinase class II; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
Dehydroquinase class II n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF0_ATOPD
64_010_scaffold_356_21
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21942..22589)
DNA (648bp) protein (216aa)
Shikimate kinase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF1_ATOPD
Putative shikimate dehydrogenase {ECO:0000313|EMBL:EWC92914.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
shikimate kinase
Displaying 21 items

View Taxonomy