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64_010_scaffold_368

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_368_1
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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2..607
DNA (606bp) protein (202aa)
Probable transcriptional regulatory protein Apar_0323 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9G6_ATOPD
Probable transcriptional regulatory protein HMPREF1493_0758 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
64_010_scaffold_368_2
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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1002..2234
DNA (1233bp) protein (411aa)
Transposase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N1N1_SLAHD
transposase
Transposase {ECO:0000313|EMBL:ACV21323.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
64_010_scaffold_368_3
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2277..2513
DNA (237bp) protein (79aa)
Death-on-curing family protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD2_9ACTN
Death-on-curing family protein {ECO:0000313|EMBL:EEE17260.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
hypothetical protein
64_010_scaffold_368_4
unknown

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2464..2658
DNA (195bp) protein (65aa)

This feature has no annotations

64_010_scaffold_368_5
Atopobium sp. oral taxon 199, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2746..3144
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZU18_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EPD77760.1}; TaxID=1203602 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 199 str. F0494.;"
64_010_scaffold_368_6
unknown

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3232..3345
DNA (114bp) protein (38aa)

This feature has no annotations

64_010_scaffold_368_7
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3640..4476
DNA (837bp) protein (279aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD3_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EEE17537.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
GntR family transcriptional regulator
64_010_scaffold_368_8
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4584..5282
DNA (699bp) protein (233aa)
Triose-phosphate isomerase {ECO:0000313|EMBL:EEE17426.1}; EC=5.3.1.1 {ECO:0000313|EMBL:EEE17426.1};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triose-phosphate isomerase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD4_9ACTN
64_010_scaffold_368_9
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5305..5826
DNA (522bp) protein (174aa)
Putative secondary thiamine-phosphate synthase enzyme n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD5_9ACTN
Putative secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:EEE17386.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
hypothetical protein
64_010_scaffold_368_10
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5854..6153
DNA (300bp) protein (100aa)
PTS system lactose/cellobiose-specific transporter subunit IIB; K02774 PTS system, galactitol-specific IIB component [EC:2.7.1.69]
Uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEE17188.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
64_010_scaffold_368_11
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6174..7568
DNA (1395bp) protein (465aa)
PTS system Galactitol-specific IIC component n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD7_9ACTN
PTS system Galactitol-specific IIC component {ECO:0000313|EMBL:EEE17232.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
PTS system Galactitol-specific IIC component; K02775 PTS system, galactitol-specific IIC component
64_010_scaffold_368_12
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7619..8119
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2C043_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EMZ42509.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
hypothetical protein
64_010_scaffold_368_13
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8122..8778
DNA (657bp) protein (219aa)
class II aldolase/adducin family protein; K01786 L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
Putative L-ribulose-5-phosphate 4-epimerase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD8_9ACTN
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EEE17209.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
64_010_scaffold_368_14
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8851..9726)
DNA (876bp) protein (292aa)
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EEE17411.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EEE17411.1};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
ketose-bisphosphate aldolase class-II; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
Ketose-bisphosphate aldolase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMD9_9ACTN
64_010_scaffold_368_15
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

9967..10419
DNA (453bp) protein (151aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02773 PTS system, galactitol-specific IIA component [EC:2.7.1.69]
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CME0_9ACTN
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EEE17296.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
64_010_scaffold_368_16
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10651..11100
DNA (450bp) protein (150aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EEE17360.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEE17360.1};; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02821 PTS system, ascorbate-specific IIA component [EC:2.7.1.69]
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CME3_9ACTN
64_010_scaffold_368_17
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11214..11414
DNA (201bp) protein (67aa)
Putative sugar-specific permease, SgaT/UlaA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CME4_9ACTN
Putative sugar-specific permease, SgaT/UlaA {ECO:0000313|EMBL:EEE17267.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
putative sugar-specific permease SgaT/UlaA; K03475 PTS system, ascorbate-specific IIC component
64_010_scaffold_368_18
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11475..12194
DNA (720bp) protein (240aa)
Putative sugar-specific permease, SgaT/UlaA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CME4_9ACTN
Putative sugar-specific permease, SgaT/UlaA {ECO:0000313|EMBL:EEE17267.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
putative sugar-specific permease SgaT/UlaA; K03475 PTS system, ascorbate-specific IIC component
64_010_scaffold_368_19
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12417..13097
DNA (681bp) protein (227aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]
Transaldolase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H5_ATOPD
64_010_scaffold_368_20
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13155..14084
DNA (930bp) protein (310aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H6_ATOPD
Transketolase, thiamine pyrophosphate-binding domain protein {ECO:0000313|EMBL:EWC91993.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
64_010_scaffold_368_21
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

14077..15003
DNA (927bp) protein (309aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase central region n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H7_ATOPD
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EWC91992.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
64_010_scaffold_368_22
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15051..15962
DNA (912bp) protein (304aa)
Helix-turn-helix domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H8_ATOPD
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ACV50766.1}; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
64_010_scaffold_368_23
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16315..17943
DNA (1629bp) protein (543aa)
ABC transporter related n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H9_ATOPD
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACV50767.1}; Flags: Precursor;; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
64_010_scaffold_368_24
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17973..18152
DNA (180bp) protein (60aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase central region n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9H7_ATOPD
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EWC94597.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_368_25
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18807..20210)
DNA (1404bp) protein (468aa)
glutamate synthase (NADPH), homotetrameric; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADPH), homotetrameric n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9I0_ATOPD
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:ACV50768.1}; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
64_010_scaffold_368_26
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20192..21034)
DNA (843bp) protein (281aa)
oxidoreductase FAD/NAD(P)-binding domain-containing protein; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W9I1_ATOPD
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EWC94932.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_368_27
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21380..21949)
DNA (570bp) protein (190aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CMK5_9ACTN
Displaying 27 items

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