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64_010_scaffold_405

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_405_1
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(1..144)
DNA (144bp) protein (48aa)
Shikimate kinase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF1_ATOPD
Putative shikimate dehydrogenase {ECO:0000313|EMBL:EWC92914.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
shikimate kinase
64_010_scaffold_405_2
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(134..406)
DNA (273bp) protein (91aa)
Chorismate mutase; K04516 chorismate mutase [EC:5.4.99.5]
Chorismate mutase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF2_ATOPD
Putative chorismate mutase {ECO:0000313|EMBL:EWC92901.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
64_010_scaffold_405_3
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(399..1538)
DNA (1140bp) protein (380aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=AROC_ATOPD
64_010_scaffold_405_4
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1542..2822)
DNA (1281bp) protein (427aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF4_ATOPD
64_010_scaffold_405_5
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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2925..3551
DNA (627bp) protein (209aa)
KDPG and KHG aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
KDPG and KHG aldolase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF5_ATOPD
KDPG and KHG aldolase {ECO:0000313|EMBL:EWC92851.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
64_010_scaffold_405_6
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3548..4627)
DNA (1080bp) protein (360aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF6_ATOPD
64_010_scaffold_405_trna_1
unknown

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4739..4812
DNA (74bp)
transferRNA Arg
64_010_scaffold_405_7
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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4856..7300
DNA (2445bp) protein (815aa)
HAD ATPase, P-type, family IC {ECO:0000313|EMBL:EWC95494.1}; EC=3.6.3.- {ECO:0000313|EMBL:EWC95494.1};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF7_ATOPD
P-type HAD superfamily ATPase
64_010_scaffold_405_8
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7334..8455
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF8_ATOPD
Zinc-ribbon domain protein {ECO:0000313|EMBL:EWC92863.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
64_010_scaffold_405_9
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8593..9132
DNA (540bp) protein (180aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAF9_ATOPD
64_010_scaffold_405_10
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

9164..10594
DNA (1431bp) protein (477aa)
Tetratricopeptide domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG0_ATOPD
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EWC95544.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
64_010_scaffold_405_11
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10665..11708
DNA (1044bp) protein (348aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG1_ATOPD
MreB/Mrl family cell shape determining protein; K03569 rod shape-determining protein MreB and related proteins
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EWC95509.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
64_010_scaffold_405_12
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11711..12802
DNA (1092bp) protein (364aa)
Rod shape-determining protein MreC n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG2_ATOPD
Rod shape-determining protein MreC {ECO:0000313|EMBL:EWC92920.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
64_010_scaffold_405_13
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12812..13372
DNA (561bp) protein (187aa)
Rod shape-determining protein MreD n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG3_ATOPD
Rod shape-determining protein MreD {ECO:0000313|EMBL:EWC95539.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
rod shape-determining protein MreD
64_010_scaffold_405_14
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13382..15391
DNA (2010bp) protein (670aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2
Penicillin-binding protein 2 n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG4_ATOPD
Penicillin-binding protein 2 {ECO:0000313|EMBL:EWC92921.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
64_010_scaffold_405_15
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15407..16633
DNA (1227bp) protein (409aa)
Cell cycle protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG5_ATOPD
Putative rod shape-determining protein RodA {ECO:0000313|EMBL:EWC95462.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
cell cycle protein; K05837 rod shape determining protein RodA
64_010_scaffold_405_16
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16637..17629
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG6_ATOPD
Uncharacterized protein {ECO:0000313|EMBL:EWC92919.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
hypothetical protein
64_010_scaffold_405_17
Atopobium sp. BS2, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17643..18791
DNA (1149bp) protein (383aa)
Radical SAM domain protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAG7_ATOPD
Radical SAM domain protein {ECO:0000313|EMBL:EWC92910.1}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;"
radical SAM protein
Displaying 18 items

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