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65_006_scaffold_64

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Displaying items 1-30 of 163 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
65_006_scaffold_64_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..619
DNA (618bp) protein (206aa)
Tyrosine recombinase xerC-like n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9FSU7_PSEAI
integrase
Integrase {ECO:0000313|EMBL:AAP82947.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
65_006_scaffold_64_trna_5
unknown

Not on your lists

comp(993..1065)
DNA (73bp)
transferRNA Lys
65_006_scaffold_64_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1125..1799)
DNA (675bp) protein (225aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aerug
7-cyano-7-deazaguanine synthase n=101 Tax=Pseudomonas RepID=QUEC_PSEA8
7-cyano-7-deazaguanine synthase
65_006_scaffold_64_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1815..2462)
DNA (648bp) protein (216aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
7-carboxy-7-deazaguanine synthase n=18 Tax=Pseudomonas RepID=Q02ID7_PSEAB
radical activating enzyme; K10026 queuosine biosynthesis protein QueE
65_006_scaffold_64_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2682..3506)
DNA (825bp) protein (275aa)
Uncharacterized protein n=14 Tax=Pseudomonas RepID=K1CBS0_PSEAI
hypothetical protein
Tol-pal system protein YbgF {ECO:0000313|EMBL:EZO85111.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
65_006_scaffold_64_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3516..4022)
DNA (507bp) protein (169aa)
Peptidoglycan-associated lipoprotein n=133 Tax=Pseudomonas RepID=PAL_PSEAE
oprL; peptidoglycan associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ERV76614.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
65_006_scaffold_64_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4075..5373)
DNA (1299bp) protein (433aa)
Protein TolB n=122 Tax=Pseudomonas RepID=B7UXW0_PSEA8
tolB; translocation protein TolB; K03641 TolB protein
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
65_006_scaffold_64_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5370..6413)
DNA (1044bp) protein (348aa)
TolA protein n=32 Tax=Pseudomonas aeruginosa RepID=E2ZPY8_PSEAI
biopolymer transport protein
Cell envelope biogenesis protein TolA {ECO:0000313|EMBL:AHB57421.1}; TaxID=1415629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MTB-1.;"
65_006_scaffold_64_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6416..6856)
DNA (441bp) protein (147aa)
Protein TolR n=134 Tax=Pseudomonas RepID=TOLR_PSEAE
tolR; TolR protein; K03560 biopolymer transport protein TolR
Biopolymer transporter TolR {ECO:0000313|EMBL:KFF34074.1}; TaxID=1262663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA01.;"
65_006_scaffold_64_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6879..7574)
DNA (696bp) protein (232aa)
Protein TolQ n=129 Tax=Pseudomonas RepID=TOLQ_PSEAE
tolQ; TolQ protein; K03562 biopolymer transport protein TolQ
TolQ protein {ECO:0000313|EMBL:AHW72673.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
65_006_scaffold_64_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7576..8022)
DNA (447bp) protein (149aa)
hypothetical protein; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Uncharacterized protein n=121 Tax=Pseudomonas RepID=G4LPQ5_PSEAI
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:ERV76619.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
65_006_scaffold_64_11
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8075..9133)
DNA (1059bp) protein (353aa)
ruvB; Holliday junction DNA helicase B; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
Holliday junction ATP-dependent DNA helicase RuvB n=124 Tax=Pseudomonas RepID=RUVB_PSEA8
65_006_scaffold_64_12
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9144..9749)
DNA (606bp) protein (202aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Holliday junction ATP-dependent DNA helicase RuvA n=123 Tax=Pseudomonas RepID=RUVA_PSEA7
65_006_scaffold_64_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9766..10290)
DNA (525bp) protein (175aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
Crossover junction endodeoxyribonuclease RuvC n=116 Tax=Pseudomonas RepID=RUVC_PSEA8
65_006_scaffold_64_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10375..11121)
DNA (747bp) protein (249aa)
Transcriptional regulatory protein PmpR n=131 Tax=Pseudomonas RepID=PMPR_PSEAE
hypothetical protein
Probable transcriptional regulatory protein V555_06505 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
65_006_scaffold_64_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11188..12963)
DNA (1776bp) protein (592aa)
Aspartate--tRNA ligase n=98 Tax=Pseudomonas RepID=SYD_PSEA8
aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ETU92423.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
65_006_scaffold_64_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13403..13873
DNA (471bp) protein (157aa)
DNA-binding stress protein n=133 Tax=Pseudomonas RepID=G4LPP9_PSEAI
DNA-binding stress protein; K04047 starvation-inducible DNA-binding protein
Dna-binding stress protein {ECO:0000313|EMBL:AHW72680.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
65_006_scaffold_64_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14087..14701
DNA (615bp) protein (205aa)
Cold-shock protein n=26 Tax=Pseudomonas aeruginosa RepID=G4LPP8_PSEAI
cold-shock DNA-binding domain-containing protein
Cold-shock protein {ECO:0000313|EMBL:BAQ41460.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
65_006_scaffold_64_18
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14750..14959)
DNA (210bp) protein (70aa)
Protein SlyX homolog n=131 Tax=Pseudomonas RepID=SLYX_PSEA8
hypothetical protein; K03745 SlyX protein
Protein SlyX homolog {ECO:0000256|HAMAP-Rule:MF_00715}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MH27.;"
65_006_scaffold_64_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14960..15388)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4WQE7_PSEAI
hypothetical protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ETD51010.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
65_006_scaffold_64_20
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16107..17438
DNA (1332bp) protein (444aa)
Basic amino acid, basic peptide and imipenem outer membrane porin OprD n=24 Tax=Pseudomonas aeruginosa RepID=E2ZPX5_PSEAI
basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor
Porin D {ECO:0000313|EMBL:EZO85127.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
65_006_scaffold_64_21
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17502..17909)
DNA (408bp) protein (136aa)
Uncharacterized protein n=5 Tax=Pseudomonas aeruginosa RepID=K1CDF5_PSEAI
hypothetical protein
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI79067.1}; Thioesterase {ECO:0000313|EMBL:AKE71348.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ41465.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
65_006_scaffold_64_22
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18017..19732
DNA (1716bp) protein (572aa)
prolyl-tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MH27.;"
Proline--tRNA ligase n=19 Tax=Pseudomonas aeruginosa RepID=SYP_PSEAB
65_006_scaffold_64_23
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19741..20697
DNA (957bp) protein (319aa)
Uncharacterized protein n=37 Tax=Pseudomonas aeruginosa RepID=G4LPM1_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO85130.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
65_006_scaffold_64_24
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20714..20989)
DNA (276bp) protein (92aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase {ECO:0000256|RuleBase:RU000553, ECO:0000256|SAAS:SAAS00255930}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=1441931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
Acylphosphatase n=5 Tax=Pseudomonas aeruginosa RepID=Q02IB6_PSEAB
65_006_scaffold_64_25
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20989..21453)
DNA (465bp) protein (155aa)
Thioredoxin n=105 Tax=Pseudomonas RepID=I6SMU3_PSEAI
thioredoxin
Probable thioredoxin {ECO:0000313|EMBL:AAG04342.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
65_006_scaffold_64_26
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21798..22181
DNA (384bp) protein (128aa)
Uncharacterized protein n=101 Tax=Pseudomonas RepID=B7UXY0_PSEA8
hypothetical protein
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI79062.1}; Uncharacterized protein {ECO:0000313|EMBL:CEI18247.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
65_006_scaffold_64_27
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22192..22386)
DNA (195bp) protein (65aa)
Uncharacterized protein n=7 Tax=Pseudomonas aeruginosa RepID=S0IW88_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO85134.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
65_006_scaffold_64_28
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22536..23771)
DNA (1236bp) protein (412aa)
UPF0761 membrane protein PA14_51960 n=7 Tax=Pseudomonas aeruginosa RepID=Y5196_PSEAB
rbn; ribonuclease; K07058 membrane protein
UPF0761 membrane protein PA14_51960 {ECO:0000255|HAMAP-Rule:MF_00672}; TaxID=208963 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain UCBPP-PA14).;"
65_006_scaffold_64_29
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23896..24249
DNA (354bp) protein (118aa)
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
Arsenate reductase n=9 Tax=Pseudomonas aeruginosa RepID=K1D1E9_PSEAI
Displaying items 1-30 of 163 in total

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