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65_006_scaffold_103

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
65_006_scaffold_103_trna_4
unknown

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comp(3..75)
DNA (73bp)
transferRNA Phe
65_006_scaffold_103_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(182..757)
DNA (576bp) protein (192aa)
HTH-type transcriptional regulator YjdC n=1187 Tax=Enterobacteriaceae RepID=YJDC_ECOL6
regulatory protein TetR
HTH-type transcriptional regulator yjdC {ECO:0000313|EMBL:EQN17415.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
65_006_scaffold_103_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(794..2491)
DNA (1698bp) protein (566aa)
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; Flags: Precursor;; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
dipZ; thiol:disulfide interchange protein (EC:1.8.1.8); K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8]
Thiol:disulfide interchange protein DsbD n=12 Tax=Escherichia coli RepID=D7ZGS1_ECOLX
65_006_scaffold_103_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2467..2805)
DNA (339bp) protein (113aa)
Divalent-cation tolerance protein CutA n=986 Tax=Enterobacteriaceae RepID=CUTA_ECO24
cutA; divalent-cation tolerance protein CutA; K03926 periplasmic divalent cation tolerance protein
Divalent-cation tolerance protein CutA {ECO:0000256|HAMAP-Rule:MF_01160}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
65_006_scaffold_103_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2920..4221)
DNA (1302bp) protein (434aa)
Anaerobic C4-dicarboxylate transporter DcuA n=811 Tax=Enterobacteriaceae RepID=DCUA_ECO57
dcuA; anaerobic C4-dicarboxylate transporter; K07791 anaerobic C4-dicarboxylate transporter DcuA
Anaerobic C4-dicarboxylate transporter {ECO:0000256|PIRNR:PIRNR004539}; TaxID=1182701 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE102.;"
65_006_scaffold_103_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4339..5775)
DNA (1437bp) protein (479aa)
aspA; aspartate ammonia-lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Aspartate ammonia-lyase {ECO:0000256|RuleBase:RU362017}; Short=Aspartase {ECO:0000256|RuleBase:RU362017};; EC=4.3.1.1 {ECO:0000256|RuleBase:RU362017};; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
Aspartate ammonia-lyase n=1368 Tax=Bacteria RepID=ASPA_ECO57
65_006_scaffold_103_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6112..6588
DNA (477bp) protein (159aa)
Protein fxsA n=604 Tax=Enterobacteriaceae RepID=C3SGG2_ECOLX
fxsA; FxsA protein; K07113 UPF0716 protein FxsA
FxsA protein {ECO:0000313|EMBL:AHY73842.1}; TaxID=1248823 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:H28 str. RM12581.;"
65_006_scaffold_103_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6604..7860)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=5 Tax=Escherichia coli RepID=H9UZW0_ECOLX
hypothetical protein; K03294 basic amino acid/polyamine antiporter, APA family
Uncharacterized protein {ECO:0000313|EMBL:AFG43053.1}; TaxID=910348 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P12b.;"
65_006_scaffold_103_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8136..8429
DNA (294bp) protein (98aa)
10 kDa chaperonin n=1413 Tax=Enterobacteriaceae RepID=CH10_ECO24
groS; chaperonin GroS; K04078 chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1125642 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.13.;"
65_006_scaffold_103_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8473..10119
DNA (1647bp) protein (549aa)
60 kDa chaperonin 1 n=1313 Tax=Enterobacteriaceae RepID=CH601_ECOK1
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1444153 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C2.;"
groEL; chaperonin GroEL; K04077 chaperonin GroEL
65_006_scaffold_103_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10257..10610
DNA (354bp) protein (118aa)
Lipoprotein n=2 Tax=Escherichia coli RepID=D6IIW0_ECOLX
yjeI; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ42940.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
65_006_scaffold_103_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10660..11529)
DNA (870bp) protein (290aa)
Uncharacterized protein n=111 Tax=Escherichia coli RepID=B7NG83_ECOLU
yjeJ; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDK46703.1}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
65_006_scaffold_103_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11764..12792)
DNA (1029bp) protein (343aa)
UPI0003D599CB related cluster n=1 Tax=unknown RepID=UPI0003D599CB
Uncharacterized protein {ECO:0000313|EMBL:ETJ11687.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein
65_006_scaffold_103_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12834..13400
DNA (567bp) protein (189aa)
Elongation factor P n=1429 Tax=Enterobacteriaceae RepID=EFP_ECO24
translation elongation factor P; K02356 elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
65_006_scaffold_103_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13455..13577
DNA (123bp) protein (41aa)
Entericidin A n=211 Tax=Escherichia coli RepID=B1LQG9_ECOSM
ecnA; entericidin A
Entericidin EcnA/B family protein {ECO:0000313|EMBL:EHU03081.1}; TaxID=868133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1A.;"
65_006_scaffold_103_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13688..13834
DNA (147bp) protein (49aa)
Entericidin B n=1424 Tax=Enterobacteriaceae RepID=ECNB_ECO57
entericidin B membrane lipoprotein
Entericidin B {ECO:0000313|EMBL:EII21457.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
65_006_scaffold_103_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14010..14327
DNA (318bp) protein (106aa)
Quaternary ammonium compound-resistance protein SugE n=1064 Tax=Enterobacteriaceae RepID=SUGE_ECO57
sugE; quaternary ammonium compound-resistance protein SugE; K11741 quaternary ammonium compound-resistance protein SugE
Multidrug resistance protein, SMR family {ECO:0000313|EMBL:EID69166.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
65_006_scaffold_103_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14324..14857)
DNA (534bp) protein (178aa)
Outer membrane lipoprotein blc n=1 Tax=Escherichia coli KTE147 RepID=L4J9R0_ECOLX
Outer membrane lipoprotein blc {ECO:0000313|EMBL:KEJ70851.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
outer membrane lipoprotein Blc; K03098 outer membrane lipoprotein Blc
65_006_scaffold_103_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14946..16079)
DNA (1134bp) protein (378aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
ampC; beta-lactamase/D-alanine carboxypeptidase (EC:3.5.2.6)
Beta-lactamase n=1 Tax=Escherichia coli KTE147 RepID=L4JB39_ECOLX
65_006_scaffold_103_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16142..16501)
DNA (360bp) protein (120aa)
frdD; fumarate reductase subunit D (EC:1.3.99.1); K00247 fumarate reductase subunit D
Fumarate reductase subunit D n=991 Tax=Bacteria RepID=FRDD_ECO27
Fumarate reductase subunit D {ECO:0000256|HAMAP-Rule:MF_00709, ECO:0000256|SAAS:SAAS00096033}; Fumarate reductase 13 kDa hydrophobic protein {ECO:0000256|HAMAP-Rule:MF_00709}; TaxID=1444181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C3.;"
65_006_scaffold_103_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16512..16907)
DNA (396bp) protein (132aa)
Fumarate reductase subunit C n=112 Tax=Escherichia coli RepID=FRDC_ECOLU
frdC; fumarate reductase subunit C; K00246 fumarate reductase subunit C
Fumarate reductase subunit C {ECO:0000256|HAMAP-Rule:MF_00708, ECO:0000256|SAAS:SAAS00095967}; Fumarate reductase 15 kDa hydrophobic protein {ECO:0000256|HAMAP-Rule:MF_00708}; TaxID=550677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B354.;"
65_006_scaffold_103_21
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16918..17652)
DNA (735bp) protein (245aa)
frdB; fumarate reductase iron-sulfur subunit (EC:1.3.99.1); K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
Fumarate reductase iron-sulfur subunit n=3 Tax=Escherichia coli RepID=F4SSM2_ECOLX
65_006_scaffold_103_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17645..19453)
DNA (1809bp) protein (603aa)
Fumarate reductase flavoprotein subunit {ECO:0000256|RuleBase:RU362050}; EC=1.3.5.4 {ECO:0000256|RuleBase:RU362050};; TaxID=1169339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE20.;"
Fumarate reductase flavoprotein subunit n=3 Tax=Escherichia coli RepID=L4J9R6_ECOLX
fumarate reductase flavoprotein subunit
65_006_scaffold_103_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19778..20755
DNA (978bp) protein (326aa)
poxA; lysyl-tRNA synthetase; K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|HAMAP-Rule:MF_00174, ECO:0000256|SAAS:SAAS00088906}; Short=EF-P--(R)-beta-lysine ligase {ECO:0000256|HAMAP-Rule:MF_00174};; EC=6.3.1.- {ECO:0000256|HAMAP-Rule:MF_00174, ECO:0000256|SAAS:SAAS00088909};; EF-P post-translational modification enzyme A {ECO:0000256|HAMAP-Rule:MF_00174}; EF-P-lysine lysyltransferase {ECO:0000256|HAMAP-Rule:MF_00174}; TaxID=1169354 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
Elongation factor P--(R)-beta-lysine ligase n=14 Tax=Enterobacteriaceae RepID=C3SGA2_ECOLX
65_006_scaffold_103_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21019..22476
DNA (1458bp) protein (486aa)
Amino acid permease family protein n=4 Tax=Escherichia coli RepID=B3H9I9_ECOLX
amino acid permease-associated region
Transporter {ECO:0000313|EMBL:EZA35800.1}; TaxID=1446704 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O174:H8 str. 04-3038.;"
65_006_scaffold_103_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22627..25950)
DNA (3324bp) protein (1108aa)
Mechanosensitive ion channel family protein n=9 Tax=Escherichia coli RepID=H5N2G5_ECOLX
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:KDX22557.1}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
yjeP; hypothetical protein; K05802 potassium efflux system protein KefA
65_006_scaffold_103_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25972..26940)
DNA (969bp) protein (323aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Phosphatidylserine decarboxylase proenzyme n=1024 Tax=Enterobacteriaceae RepID=PSD_ECO24
65_006_scaffold_103_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27037..28089)
DNA (1053bp) protein (351aa)
yjeQ; Ribosome small subunit-stimulated GTPase EngC; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
Putative ribosome biogenesis GTPase RsgA n=429 Tax=Escherichia RepID=RSGA_ECO27
65_006_scaffold_103_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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28184..28729
DNA (546bp) protein (182aa)
orn; oligoribonuclease Orn; K13288 oligoribonuclease [EC:3.1.-.-]
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1444037 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C1.;"
Oligoribonuclease n=1042 Tax=cellular organisms RepID=ORN_ECO24
65_006_scaffold_103_trna_1
unknown

Not on your lists

28940..29012
DNA (73bp)
transferRNA Gly
Displaying items 1-30 of 43 in total

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