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65_006_scaffold_105

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Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
65_006_scaffold_105_trna_1
unknown

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172..245
DNA (74bp)
transferRNA Arg
65_006_scaffold_105_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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459..1025
DNA (567bp) protein (189aa)
HAD-superfamily hydrolase, subfamily IA n=997 Tax=Enterobacteriaceae RepID=A7ZQC3_ECO24
yqaB; fructose-1-phosphatase
Phosphatase YqaB {ECO:0000313|EMBL:ELI23234.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
65_006_scaffold_105_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1022..1450
DNA (429bp) protein (143aa)
Inner membrane protein yqaA n=1 Tax=Escherichia coli KTE147 RepID=L4JLI3_ECOLX
Inner membrane protein yqaA {ECO:0000313|EMBL:KEL71758.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
hypothetical protein
65_006_scaffold_105_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1523..3079
DNA (1557bp) protein (519aa)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-Rule:MF_00578}; Gamma-glutamylcysteine synthetase {ECO:0000256|HAMAP-Rule:MF_00578}; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
glutamate--cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate--cysteine ligase n=578 Tax=Enterobacteriaceae RepID=GSH1_ECO45
65_006_scaffold_105_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3229..3744
DNA (516bp) protein (172aa)
luxS; S-ribosylhomocysteinase; K07173 S-ribosylhomocysteine lyase [EC:4.4.1.21]
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
S-ribosylhomocysteine lyase n=546 Tax=Enterobacteriaceae RepID=LUXS_ECO24
65_006_scaffold_105_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3808..5346)
DNA (1539bp) protein (513aa)
Multidrug export protein EmrB n=871 Tax=Enterobacteriaceae RepID=EMRB_ECO57
emrB; multidrug efflux system protein; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Multidrug resistance protein B {ECO:0000313|EMBL:KDV31710.1}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
65_006_scaffold_105_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5363..6535)
DNA (1173bp) protein (391aa)
Multidrug resistance protein A n=758 Tax=Enterobacteriaceae RepID=E2QQD9_ECOLX
emrA; multidrug efflux system; K03543 multidrug resistance protein A
Multidrug resistance protein A {ECO:0000313|EMBL:ESA67956.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
65_006_scaffold_105_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6662..7192)
DNA (531bp) protein (177aa)
Transcriptional repressor MprA n=1233 Tax=Enterobacteriaceae RepID=MPRA_ECO57
mprA; MarR-family transcriptional repressor; K15974 MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ESA85898.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
65_006_scaffold_105_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7283..7618)
DNA (336bp) protein (112aa)
Uncharacterized protein n=127 Tax=Escherichia coli PF8_ECOSM">RepID=B1LPF8_ECOSM
hypothetical protein
Branched-chain amino acid transport family protein {ECO:0000313|EMBL:KDW74121.1}; TaxID=1444053 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C1.;"
65_006_scaffold_105_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7608..8345)
DNA (738bp) protein (246aa)
Inner membrane protein ygaZ n=1010 Tax=Enterobacteriaceae RepID=C3SY67_ECOLX
ygaZ; putative transporter
Membrane protein {ECO:0000313|EMBL:EZD92198.1}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
65_006_scaffold_105_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8469..9653)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4JK61_ECOLX
Major Facilitator Superfamily protein {ECO:0000313|EMBL:KEL71767.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
major facilitator superfamily protein
65_006_scaffold_105_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10106..11098)
DNA (993bp) protein (331aa)
Glycine betaine-binding periplasmic protein n=1 Tax=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) RepID=Q8CVS8_ECOL6
proX; proline/glycine betaine ABC transporter; K02002 glycine betaine/proline transport system substrate-binding protein
Glycine betaine-binding periplasmic protein {ECO:0000313|EMBL:EYE01672.1}; TaxID=1444215 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-110-08_S4_C1.;"
65_006_scaffold_105_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11156..12220)
DNA (1065bp) protein (355aa)
Glycine betaine/L-proline transport system permease protein proW n=12 Tax=Escherichia coli RepID=F7MZU3_ECOLX
Glycine betaine/L-proline transport system permease protein ProW {ECO:0000313|EMBL:EIH12866.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
proW; glycine betaine transporter membrane protein; K02001 glycine betaine/proline transport system permease protein
65_006_scaffold_105_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12213..13415)
DNA (1203bp) protein (401aa)
proV; glycine betaine transporter ATP-binding subunit; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline transport ATP-binding protein n=390 Tax=Escherichia coli RepID=E2QQD2_ECOLX
Glycine betaine/L-proline transport ATP-binding protein ProV {ECO:0000313|EMBL:EQO62669.1}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
65_006_scaffold_105_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13771..14730)
DNA (960bp) protein (320aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
nrdF; ribonucleotide-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Escherichia coli KTE147 RepID=L4JJD7_ECOLX
65_006_scaffold_105_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14740..16884)
DNA (2145bp) protein (715aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
nrdE; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
UPI0003D6050D related cluster n=1 Tax=unknown RepID=UPI0003D6050D
65_006_scaffold_105_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16857..17267)
DNA (411bp) protein (137aa)
UPI0003D5AD98 related cluster n=1 Tax=unknown RepID=UPI0003D5AD98
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
nrdI; ribonucleotide reductase stimulatory protein; K03647 protein involved in ribonucleotide reduction
65_006_scaffold_105_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17264..17509)
DNA (246bp) protein (82aa)
UPI0003D67AE5 related cluster n=1 Tax=unknown RepID=UPI0003D67AE5
Glutaredoxin-like protein nrdH {ECO:0000313|EMBL:ETJ23572.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
nrdH; Glutaredoxin-like protein; K06191 glutaredoxin-like protein NrdH
65_006_scaffold_105_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17718..18149)
DNA (432bp) protein (144aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
Carboxymuconolactone decarboxylase family protein n=401 Tax=Escherichia RepID=B1LPE7_ECOSM
carboxymuconolactone decarboxylase family protein
65_006_scaffold_105_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18237..19571
DNA (1335bp) protein (445aa)
Transcriptional regulator n=29 Tax=Escherichia coli RepID=D6JE13_ECOLX
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:KDW74132.1}; TaxID=1444053 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C1.;"
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
65_006_scaffold_105_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19628..19957)
DNA (330bp) protein (110aa)
Uncharacterized protein YgaM n=1302 Tax=Enterobacteriaceae RepID=YGAM_ECO57
ygaM; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDV64083.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
65_006_scaffold_105_21
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20109..20453
DNA (345bp) protein (115aa)
Uncharacterized protein YgaC n=1289 Tax=Enterobacteriaceae RepID=YGAC_ECO57
hypothetical protein
Putative cytoplasmic protein {ECO:0000313|EMBL:EIQ34316.1}; TaxID=766140 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 4444-74.;"
65_006_scaffold_105_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20490..20939)
DNA (450bp) protein (150aa)
L-alanine exporter AlaE n=219 Tax=Escherichia RepID=A1AEL4_ECOK1
ygaW; hypothetical protein
L-alanine exporter AlaE {ECO:0000256|HAMAP-Rule:MF_00914}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
65_006_scaffold_105_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21607..22011
DNA (405bp) protein (135aa)
DNA-binding protein StpA n=978 Tax=Enterobacteriaceae RepID=STPA_ECO57
DNA binding protein, nucleoid-associated; K11685 DNA-binding protein StpA
DNA-binding protein {ECO:0000256|PIRNR:PIRNR002096}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C2.;"
65_006_scaffold_105_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22058..22582)
DNA (525bp) protein (175aa)
Inner membrane protein YgaP n=17 Tax=Escherichia coli RepID=F4TJE0_ECOLX
hypothetical protein
Rhodanese-like protein {ECO:0000313|EMBL:ESA71868.1}; TaxID=1268975 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 110957.;"
65_006_scaffold_105_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22592..22891)
DNA (300bp) protein (100aa)
Probable HTH-type transcriptional regulator YgaV n=848 Tax=Enterobacteriaceae RepID=YGAV_ECOLI
ArsR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ELE53886.1}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
65_006_scaffold_105_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23074..23232
DNA (159bp) protein (53aa)
UPF0057 membrane protein YqaE n=1411 Tax=Enterobacteriaceae RepID=YQAE_ECO57
yqae; hypothetical protein
Proteolipid membrane potential modulator family protein {ECO:0000313|EMBL:EMW17925.1}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
65_006_scaffold_105_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23316..23765
DNA (450bp) protein (150aa)
LysM/BON superfamily protein n=14 Tax=Escherichia coli RepID=L2XF55_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ETJ28652.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein
65_006_scaffold_105_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23766..24428)
DNA (663bp) protein (221aa)
HTH-type transcriptional repressor CsiR n=906 Tax=Enterobacteriaceae RepID=CSIR_ECOLI
csiR; DNA-binding transcriptional regulator CsiR; K15735 GntR family transcriptional regulator, carbon starvation induced regulator
HTH-type transcriptional repressor CsiR {ECO:0000313|EMBL:KDW78887.1}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
65_006_scaffold_105_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24449..25849)
DNA (1401bp) protein (467aa)
GABA permease n=382 Tax=Enterobacteriaceae RepID=GABP_ECOLI
gabP; GABA permease; K11735 GABA permease
GABA permease {ECO:0000313|EMBL:EOV63387.1}; TaxID=1182676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE69.;"
Displaying items 1-30 of 38 in total

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