ggKbase home page

65_006_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
65_006_scaffold_121_trna_1
unknown

Not on your lists

22..95
DNA (74bp)
transferRNA Asp
65_006_scaffold_121_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261..1064
DNA (804bp) protein (268aa)
dkgB; 2,5-diketo-D-gluconate reductase B (EC:1.1.1.274); K06222 2,5-diketo-D-gluconate reductase B [EC:1.1.1.274]
UPI0003D6142A related cluster n=1 Tax=unknown RepID=UPI0003D6142A
2,5-diketo-D-gluconic acid reductase B {ECO:0000313|EMBL:ETJ19715.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
65_006_scaffold_121_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1061..1975)
DNA (915bp) protein (305aa)
LysR-family transcriptional regulator n=70 Tax=Enterobacteriaceae RepID=E3PDF5_ECOH1
LysR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ESK42819.1}; TaxID=1281241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3323-1.;"
65_006_scaffold_121_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2237..3016
DNA (780bp) protein (260aa)
UPF0294 protein YafD n=2 Tax=Escherichia coli RepID=E9Z253_ECOLX
hypothetical protein
UPF0294 protein YafD {ECO:0000256|HAMAP-Rule:MF_01119}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
65_006_scaffold_121_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3094..3864
DNA (771bp) protein (257aa)
S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Escherichia coli RepID=L4J872_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EGP26411.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
putative methyltransferase
65_006_scaffold_121_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3911..5131)
DNA (1221bp) protein (407aa)
mltD; membrane-bound lytic murein transglycosylase D; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:EMX23177.1}; EC=4.2.2.n1 {ECO:0000313|EMBL:EMX23177.1};; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
membrane-bound lytic murein transglycosylase D n=1 Tax=Escherichia coli RepID=UPI0002BB6A2B
65_006_scaffold_121_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5341..6096)
DNA (756bp) protein (252aa)
gloB; hydroxyacylglutathione hydrolase; K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
Hydroxyacylglutathione hydrolase n=21 Tax=Escherichia RepID=GLO2_ESCF3
65_006_scaffold_121_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6130..6852
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=D3GS41_ECO44
putative methyltransferase
Methyltransferase domain protein {ECO:0000313|EMBL:EGI52330.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
65_006_scaffold_121_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6849..7316)
DNA (468bp) protein (156aa)
rnhA; ribonuclease HI; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=868160 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC6A.;"
Ribonuclease H n=7 Tax=Enterobacteriaceae RepID=D2AIY9_SHIF2
65_006_scaffold_121_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7372..8112
DNA (741bp) protein (247aa)
dnaQ; DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=3 Tax=Escherichia coli RepID=L3QHP2_ECOLX
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:ETJ23085.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
65_006_scaffold_121_trna_2
unknown

Not on your lists

8245..8318
DNA (74bp)
transferRNA Asp
65_006_scaffold_121_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8648..9433
DNA (786bp) protein (262aa)
Uncharacterized protein n=4 Tax=Escherichia coli RepID=D7ZKN5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EFJ79134.1}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
yafT; putative aminopeptidase
65_006_scaffold_121_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9582..10049)
DNA (468bp) protein (156aa)
Uncharacterized protein n=11 Tax=Escherichia coli RepID=L3JEI6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQO73709.1}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
ykfM; hypothetical protein
65_006_scaffold_121_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10059..10790)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Escherichia coli HVH 6 (3-8296502) RepID=T5PNV6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ETJ23088.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein
65_006_scaffold_121_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10750..10974)
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4J6U7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQN33418.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
hypothetical protein
65_006_scaffold_121_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11018..11500)
DNA (483bp) protein (161aa)
Type VI secretion system effector, Hcp1 family n=35 Tax=Escherichia coli RepID=D7ZKN8_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ETY50537.1}; TaxID=1328434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BWH 40.;"
hypothetical protein
65_006_scaffold_121_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11524..12876)
DNA (1353bp) protein (451aa)
ImpA domain protein n=14 Tax=Escherichia coli RepID=B8ZYT8_ECOLX
ImpA-related N-terminal family protein {ECO:0000313|EMBL:KEJ80907.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
hypothetical protein; K11911 type VI secretion system protein VasL
65_006_scaffold_121_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12887..16411)
DNA (3525bp) protein (1175aa)
Type VI secretion protein IcmF n=6 Tax=Escherichia coli RepID=L3YKT5_ECOLX
Putative uncharacterized protein {ECO:0000313|EMBL:CAX20326.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
IcmF-like protein; K11891 type VI secretion system protein ImpL
65_006_scaffold_121_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16430..17842)
DNA (1413bp) protein (471aa)
Type VI secretion-associated protein n=15 Tax=Escherichia coli RepID=H1FQY2_ECOLX
ImpA-related N-terminal family protein {ECO:0000313|EMBL:KEJ80909.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
ImpA domain-containing protein; K11910 type VI secretion system protein VasJ
65_006_scaffold_121_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17847..18590)
DNA (744bp) protein (248aa)
Type VI secretion-associated protein n=1 Tax=Escherichia coli KTE147 RepID=L4J6V1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEL65548.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
hypothetical protein; K11909 type VI secretion system protein VasI
65_006_scaffold_121_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18587..21358)
DNA (2772bp) protein (924aa)
ATP-dependent Clp protease ClpV n=1 Tax=Escherichia coli RepID=UPI0002BABFF1
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:KEL65549.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
putative ATP-dependent Clp proteinase ATP-binding chain
65_006_scaffold_121_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21367..22128)
DNA (762bp) protein (254aa)
Type IV / VI secretion system protein, DotU family n=10 Tax=Escherichia coli RepID=D7ZKP4_ECOLX
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EFJ79143.1}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
hypothetical protein; K11892 type VI secretion system protein ImpK
65_006_scaffold_121_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22133..23464)
DNA (1332bp) protein (444aa)
Type VI secretion protein, VC_A0114 family n=30 Tax=Escherichia coli RepID=D7ZKP5_ECOLX
Type VI secretion protein {ECO:0000313|EMBL:EQO73718.1}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
hypothetical protein
65_006_scaffold_121_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23467..23991)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Escherichia coli RepID=UPI00035EC811
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:ETJ24312.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
etsN; OM lipoprotein; K11906 type VI secretion system protein VasD
65_006_scaffold_121_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23988..25268)
DNA (1281bp) protein (427aa)
Type VI secretion system FHA domain-containing protein n=3 Tax=Escherichia coli RepID=L4J6V6_ECOLX
Type VI secretion system FHA domain protein {ECO:0000313|EMBL:EIH15810.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
hypothetical protein; K11894 type VI secretion system protein ImpI
65_006_scaffold_121_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25293..26375)
DNA (1083bp) protein (361aa)
Type VI secretion protein n=2 Tax=Escherichia coli KTE147 RepID=L4J894_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEJ80917.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
hypothetical protein
65_006_scaffold_121_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26339..28189)
DNA (1851bp) protein (617aa)
Type VI secretion protein, VC_A0110 family n=3 Tax=Escherichia coli RepID=F7N670_ECOLX
Type VI secretion protein {ECO:0000313|EMBL:ETJ23576.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
65_006_scaffold_121_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28193..28606)
DNA (414bp) protein (138aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Escherichia coli KTE147 RepID=L4J715_ECOLX
Type VI secretion system lysozyme-related protein {ECO:0000313|EMBL:ETJ23577.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein; K11905 type VI secretion system protein
65_006_scaffold_121_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28613..30088)
DNA (1476bp) protein (492aa)
UPI0003D637BB related cluster n=1 Tax=unknown RepID=UPI0003D637BB
EvpB/family type VI secretion protein {ECO:0000313|EMBL:ETJ23578.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
65_006_scaffold_121_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30157..30363)
DNA (207bp) protein (69aa)
Uncharacterized protein n=19 Tax=Escherichia coli RepID=U9YMY7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EGP21847.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy