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66_004_scaffold_184

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_004_scaffold_184_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3..179)
DNA (177bp) protein (59aa)
alcohol dehydrogenase (EC:1.1.1.1); K00001 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase, zinc-containing n=3 Tax=Staphylococcus epidermidis RepID=J1BAJ7_STAEP
Alcohol dehydrogenase {ECO:0000313|EMBL:ESV20543.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
66_004_scaffold_184_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

312..1337
DNA (1026bp) protein (342aa)
Alkanal monooxygenase n=13 Tax=Staphylococcus epidermidis RepID=V4Q4T3_STAEP
Alkanal monooxygenase {ECO:0000313|EMBL:ESV20542.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
alkanal monooxygenase subunit alpha
66_004_scaffold_184_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1405..2271)
DNA (867bp) protein (289aa)
Uncharacterized protein n=15 Tax=Staphylococcus epidermidis RepID=E6JNC1_STAEP
Alpha/beta hydrolase {ECO:0000313|EMBL:ESV20541.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein
66_004_scaffold_184_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2509..3921)
DNA (1413bp) protein (471aa)
6-phospho-beta-galactosidase {ECO:0000256|HAMAP-Rule:MF_01574, ECO:0000256|RuleBase:RU004469}; EC=3.2.1.85 {ECO:0000256|HAMAP-Rule:MF_01574};; Beta-D-phosphogalactoside galactohydrolase {ECO:0000256|HAMAP-Rule:MF_01574}; P-beta-Gal {ECO:0000256|HAMAP-Rule:MF_01574}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
lacG; 6-phospho-beta-galactosidase (EC:3.2.1.85); K01220 6-phospho-beta-galactosidase [EC:3.2.1.85]
6-phospho-beta-galactosidase n=20 Tax=Staphylococcus epidermidis RepID=C5R0S0_STAEP
66_004_scaffold_184_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3937..5685)
DNA (1749bp) protein (583aa)
PTS system, lactose-specific IIC component {ECO:0000313|EMBL:EES34933.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EES34933.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
lactose-specificiibc component; K02787 PTS system, lactose-specific IIB component [EC:2.7.1.69]; K02788 PTS system, lactose-specific IIC component
PTS system, lactose-specific IIC component n=3 Tax=Staphylococcus epidermidis RepID=C5R0R9_STAEP
66_004_scaffold_184_6

Not on your lists

comp(5691..6005)
DNA (315bp) protein (105aa)
PTS system lactose-specific transporter subunit IIA; K02786 PTS system, lactose-specific IIA component [EC:2.7.1.69]
Lactose-specific phosphotransferase enzyme IIA component n=77 Tax=Staphylococcus epidermidis RepID=PTLA_STAEQ
Lactose-specific phosphotransferase enzyme IIA component {ECO:0000313|EMBL:ETJ21650.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
66_004_scaffold_184_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6025..7002)
DNA (978bp) protein (326aa)
Tagatose 1,6-diphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; EC=4.1.2.40 {ECO:0000256|HAMAP-Rule:MF_00734};; D-tagatose-1,6-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; Tagatose-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
lacD; tagatose 1,6-diphosphate aldolase (EC:4.1.2.40); K01635 tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
Tagatose 1,6-diphosphate aldolase n=21 Tax=Staphylococcus epidermidis RepID=C5R0R7_STAEP
66_004_scaffold_184_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7006..7938)
DNA (933bp) protein (311aa)
Tagatose-6-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_01557, ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|HAMAP-Rule:MF_01557, ECO:0000256|PIRNR:PIRNR000535};; Phosphotagatokinase {ECO:0000256|HAMAP-Rule:MF_01557}; Tagatose-6-phosphate kinase; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
lacC; tagatose-6-phosphate kinase (EC:2.7.1.144); K00917 tagatose 6-phosphate kinase [EC:2.7.1.144]
Tagatose-6-phosphate kinase n=1 Tax=Staphylococcus epidermidis VCU128 RepID=H3WMV2_STAEP
66_004_scaffold_184_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7951..8466)
DNA (516bp) protein (172aa)
Galactose-6-phosphate isomerase subunit LacB {ECO:0000256|HAMAP-Rule:MF_01556}; EC=5.3.1.26 {ECO:0000256|HAMAP-Rule:MF_01556};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
galactose-6-phosphate isomerase subunit LacB (EC:5.3.1.26); K01819 galactose-6-phosphate isomerase [EC:5.3.1.26]
Galactose-6-phosphate isomerase, LacB subunit n=28 Tax=Staphylococcus epidermidis RepID=C5R0R5_STAEP
66_004_scaffold_184_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8481..8909)
DNA (429bp) protein (143aa)
Galactose-6-phosphate isomerase subunit LacA {ECO:0000256|HAMAP-Rule:MF_01555}; EC=5.3.1.26 {ECO:0000256|HAMAP-Rule:MF_01555};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
lacA; galactose-6-phosphate isomerase subunit LacA (EC:5.3.1.26); K01819 galactose-6-phosphate isomerase [EC:5.3.1.26]
Galactose-6-phosphate isomerase subunit lacA n=34 Tax=Staphylococcus epidermidis RepID=C5R0R4_STAEP
66_004_scaffold_184_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9263..10018)
DNA (756bp) protein (252aa)
Lactose phosphotransferase system repressor n=10 Tax=Staphylococcus epidermidis RepID=E6JNC9_STAEP
DeoR family transcriptional regulator {ECO:0000313|EMBL:ESV20533.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
lacR; lactose phosphotransferase system repressor; K02530 DeoR family transcriptional regulator, lactose phosphotransferase system repressor
66_004_scaffold_184_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10316..11056
DNA (741bp) protein (247aa)
NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NAD-dependent protein deacetylase n=4 Tax=Staphylococcus epidermidis RepID=H0DSN0_STAEP
66_004_scaffold_184_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(11318..11710)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=81 Tax=Staphylococcus epidermidis RepID=RS9_STAEQ
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
66_004_scaffold_184_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(11730..12167)
DNA (438bp) protein (146aa)
50S ribosomal protein L13 n=43 Tax=Staphylococcus epidermidis RepID=RL13_STAES
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
66_004_scaffold_184_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12427..13230)
DNA (804bp) protein (268aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=4 Tax=Staphylococcus epidermidis RepID=H0DSN3_STAEP
66_004_scaffold_184_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13234..14040)
DNA (807bp) protein (269aa)
Energy-coupling factor transporter transmembrane protein EcfT n=7 Tax=Staphylococcus epidermidis RepID=H0DSN4_STAEP
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
cobalt transport family protein; K02008 cobalt/nickel transport system permease protein
66_004_scaffold_184_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14030..14890)
DNA (861bp) protein (287aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
ABC transporter, ATP-binding protein n=10 Tax=Staphylococcus epidermidis RepID=C5R0Q7_STAEP
cbiO; cobalt transporter ATP-binding subunit; K02006 cobalt/nickel transport system ATP-binding protein
66_004_scaffold_184_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14887..15732)
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
ABC transporter, ATP-binding protein n=1 Tax=Staphylococcus epidermidis W23144 RepID=C5R0Q6_STAEP
cbiO; cobalt transporter ATP-binding subunit; K02006 cobalt/nickel transport system ATP-binding protein
66_004_scaffold_184_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(16027..16395)
DNA (369bp) protein (123aa)
50S ribosomal protein L17 n=8 Tax=Staphylococcus epidermidis RepID=C5R0Q5_STAEP
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
66_004_scaffold_184_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16412..17356)
DNA (945bp) protein (315aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA-directed RNA polymerase subunit alpha n=76 Tax=Staphylococcus epidermidis RepID=RPOA_STAEQ
Displaying 20 items

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