ggKbase home page

66_004_scaffold_259

Search features with annotation key words

Displaying 14 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_004_scaffold_259_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2..2503)
DNA (2502bp) protein (834aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=94 Tax=Staphylococcus RepID=RPOB_STAEQ
66_004_scaffold_259_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2719..3447)
DNA (729bp) protein (243aa)
Ribosomal protein L11 methyltransferase-like protein n=10 Tax=Staphylococcus epidermidis RepID=H0DW32_STAEP
Methyltransferase {ECO:0000313|EMBL:ESV19936.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein
66_004_scaffold_259_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(3519..3887)
DNA (369bp) protein (123aa)
50S ribosomal protein L7/L12 n=4 Tax=Staphylococcus epidermidis RepID=H3WS17_STAEP
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
66_004_scaffold_259_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(3925..4425)
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=79 Tax=Staphylococcus RepID=RL10_STAEQ
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
66_004_scaffold_259_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(4700..5395)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=79 Tax=Staphylococcus epidermidis RepID=RL1_STAEQ
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
66_004_scaffold_259_6
Staphylococcus haemolyticus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(5609..6031)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=71 Tax=Staphylococcus RepID=RL11_STAEQ
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=279808 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus haemolyticus (strain JCSC1435).;"
66_004_scaffold_259_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6362..6910)
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=23 Tax=Staphylococcus epidermidis RepID=E6JR31_STAEP
nusG; transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
66_004_scaffold_259_8

Not on your lists

comp(6921..7106)
DNA (186bp) protein (62aa)
Protein translocase subunit SecE n=79 Tax=Staphylococcus epidermidis RepID=SECE_STAEQ
Preprotein translocase subunit SecE {ECO:0000313|EMBL:ETJ20435.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
66_004_scaffold_259_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7433..8008)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor, sigma-70 family protein n=15 Tax=Staphylococcus epidermidis RepID=E6JR34_STAEP
RNA polymerase sigma factor sigW {ECO:0000313|EMBL:ESV18625.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
RNA polymerase sigma factor sigW; K03091 RNA polymerase sporulation-specific sigma factor
66_004_scaffold_259_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8078..8605)
DNA (528bp) protein (176aa)
Uncharacterized protein n=81 Tax=Staphylococcus epidermidis RepID=Q5HRM0_STAEQ
hypothetical protein; K06962
Uncharacterized protein {ECO:0000313|EMBL:AAW53564.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
66_004_scaffold_259_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8602..9369)
DNA (768bp) protein (256aa)
tRNA/rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase, TrmH family, group 3 n=16 Tax=Staphylococcus epidermidis RepID=H0DW22_STAEP
RNA methyltransferase {ECO:0000313|EMBL:ESV18623.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
66_004_scaffold_259_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9359..9745)
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein; K11145 ribonuclease III family protein [EC:3.1.26.-]
Mini-ribonuclease 3 n=2 Tax=Staphylococcus epidermidis RepID=H0DW21_STAEP
66_004_scaffold_259_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9750..11150)
DNA (1401bp) protein (467aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=18 Tax=Staphylococcus epidermidis RepID=H3V690_STAEP
66_004_scaffold_259_14
Staphylococcus capitis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11134..11229)
DNA (96bp) protein (32aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1296619 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus capitis CR01.;"
serine O-acetyltransferase; K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Staphylococcus caprae M23864:W1 RepID=C5QPN2_9STAP
Displaying 14 items

View Taxonomy