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66_004_scaffold_33

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Displaying items 1-30 of 168 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_004_scaffold_33_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(480..1856)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=2 Tax=Clostridium perfringens RepID=B1R9Y0_CLOPF
66_004_scaffold_33_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2167..3210
DNA (1044bp) protein (348aa)
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=9 Tax=Clostridium perfringens RepID=H7CZG5_CLOPF
Radical SAM domain protein {ECO:0000313|EMBL:EDT25626.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
66_004_scaffold_33_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3450..4691)
DNA (1242bp) protein (414aa)
oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Pyridine nucleotide-disulphide oxidoreductase n=2 Tax=Clostridium perfringens RepID=Q0TMJ1_CLOP1
Probable glutamate synthase small chain {ECO:0000313|EMBL:BAB82167.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_004_scaffold_33_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4784..5653)
DNA (870bp) protein (290aa)
LD-carboxypeptidase family protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BV61_CLOPF
LD-carboxypeptidase family protein {ECO:0000313|EMBL:EDT14432.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
mccF; LD-carboxypeptidase
66_004_scaffold_33_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5827..6945)
DNA (1119bp) protein (373aa)
Peptidase n=5 Tax=Clostridium perfringens RepID=H7CZG8_CLOPF
pepT; peptidase
Peptidase {ECO:0000313|EMBL:EIA15919.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7133..8536)
DNA (1404bp) protein (468aa)
glyS; glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14]
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Glycine--tRNA ligase n=10 Tax=Clostridium perfringens RepID=SYG_CLOPE
66_004_scaffold_33_trna_9
unknown

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comp(8997..9068)
DNA (72bp)
transferRNA Asn
66_004_scaffold_33_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9277..11220)
DNA (1944bp) protein (648aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
lysS; lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=2 Tax=Clostridium perfringens RepID=B1BV64_CLOPF
66_004_scaffold_33_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11246..11722)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=11 Tax=Clostridium perfringens RepID=GREA_CLOP1
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12001..12981)
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
tRNA-dihydrouridine synthase n=10 Tax=Clostridium perfringens RepID=H7CZH2_CLOPF
putative dihydrouridine synthase
66_004_scaffold_33_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12988..13767)
DNA (780bp) protein (260aa)
pantothenate kinase (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33]
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Type III pantothenate kinase n=10 Tax=Clostridium perfringens RepID=COAX_CLOP1
66_004_scaffold_33_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13971..15641)
DNA (1671bp) protein (557aa)
formate--tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE7_CLOPF
66_004_scaffold_33_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15843..17648)
DNA (1806bp) protein (602aa)
ftsH; ATP-dependent metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
ATP-dependent zinc metalloprotease FtsH n=6 Tax=Clostridium perfringens RepID=H7CZH5_CLOPF
66_004_scaffold_33_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17723..18274)
DNA (552bp) protein (184aa)
hprT; hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase n=5 Tax=Clostridium perfringens RepID=H7CZH6_CLOPF
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EIA15927.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18277..19686)
DNA (1410bp) protein (470aa)
tilS; tRNA(Ile)-lysidine synthetase (EC:6.-.-.-); K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000255|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000255|HAMAP-Rule:MF_01161}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
tRNA(Ile)-lysidine synthase n=3 Tax=Clostridium perfringens RepID=TILS_CLOP1
66_004_scaffold_33_15
unknown

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comp(19640..19735)
DNA (96bp) protein (32aa)

This feature has no annotations

66_004_scaffold_33_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19903..22293)
DNA (2391bp) protein (797aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16); K06382 stage II sporulation protein E [EC:3.1.3.16]
Stage II sporulation protein E {ECO:0000313|EMBL:EDT14430.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDT14430.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Stage II sporulation protein E n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVF1_CLOPF
66_004_scaffold_33_trna_8
unknown

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comp(22621..22706)
DNA (86bp)
transferRNA Leu
66_004_scaffold_33_trna_7
unknown

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comp(22726..22799)
DNA (74bp)
transferRNA Met
66_004_scaffold_33_trna_6
unknown

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comp(22806..22878)
DNA (73bp)
transferRNA Met
66_004_scaffold_33_trna_5
unknown

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comp(22888..22973)
DNA (86bp)
transferRNA Leu
66_004_scaffold_33_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23332..23736)
DNA (405bp) protein (135aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CZH9_CLOPF
hypothetical protein; K07571 S1 RNA binding domain protein
Uncharacterized protein {ECO:0000313|EMBL:EIA15930.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23796..24188)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XHK8_CLOPE
hypothetical protein; K05589 cell division protein FtsB
Uncharacterized protein {ECO:0000313|EMBL:BAB82181.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_004_scaffold_33_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24212..24586)
DNA (375bp) protein (125aa)
Spore cortex biosynthesis protein YabQ n=4 Tax=Clostridium perfringens RepID=Q0TMH6_CLOP1
yabQ; spore cortex biosynthesis protein YabQ
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:EDT27241.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
66_004_scaffold_33_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24596..24895)
DNA (300bp) protein (100aa)
Sporulation protein YabP n=4 Tax=Clostridium perfringens RepID=H7CZI2_CLOPF
yabP; sporulation protein YabP
Sporulation protein YabP {ECO:0000313|EMBL:EIA15933.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25026..25286)
DNA (261bp) protein (87aa)
S4 domain-containing protein n=7 Tax=Clostridium perfringens RepID=H7CZI3_CLOPF
S4 domain-containing protein
S4 domain-containing protein {ECO:0000313|EMBL:EIA15934.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_33_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25394..25669)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=8 Tax=Clostridium perfringens RepID=H7CZI4_CLOPF
hup; DNA-binding protein HU; K03530 DNA-binding protein HU-beta
Probable DNA binding protein {ECO:0000313|EMBL:BAB82185.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_004_scaffold_33_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25886..27337)
DNA (1452bp) protein (484aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=Q8XHK3_CLOPE
nucleotide pyrophosphohydrolase; K02499 tetrapyrrole methylase family protein / MazG family protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82186.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_004_scaffold_33_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27367..28899)
DNA (1533bp) protein (511aa)
Stage V sporulation protein B n=2 Tax=Clostridium perfringens RepID=H7CZI6_CLOPF
Stage V sporulation protein B {ECO:0000313|EMBL:EIA15907.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
spoVB; stage V sporulation protein B; K06409 stage V sporulation protein B
66_004_scaffold_33_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29079..29627)
DNA (549bp) protein (183aa)
Stage V sprulation protein T n=5 Tax=Clostridium perfringens RepID=Q0SQ69_CLOPS
spoVT; stage V sprulation protein T; K04769 AbrB family transcriptional regulator, stage V sporulation protein T
Stage V sprulation protein T {ECO:0000313|EMBL:EDT24336.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Displaying items 1-30 of 168 in total

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