ggKbase home page

66_006_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 117 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_006_scaffold_30_trna_1
unknown

Not on your lists

comp(452..523)
DNA (72bp)
transferRNA Glu
66_006_scaffold_30_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(650..1573)
DNA (924bp) protein (308aa)
peptidase S15 n=1 Tax=Clostridium sp. JC122 RepID=UPI00028862E0
X-Pro dipeptidyl-peptidase family protein {ECO:0000313|EMBL:AIY82747.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
peptidase S15; K06889
66_006_scaffold_30_2
unknown

Not on your lists

comp(1692..1844)
DNA (153bp) protein (51aa)

This feature has no annotations

66_006_scaffold_30_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2009..2863)
DNA (855bp) protein (285aa)
gidA_2; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
UPI0003D59403 related cluster n=1 Tax=unknown RepID=UPI0003D59403
Thioredoxin reductase {ECO:0000313|EMBL:KHD13857.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
66_006_scaffold_30_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2870..3184)
DNA (315bp) protein (105aa)
Thioredoxin n=1 Tax=Clostridium colicanis 209318 RepID=N9WHR0_9CLOT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
trx; thioredoxin; K03671 thioredoxin 1
66_006_scaffold_30_5
unknown

Not on your lists

comp(3273..3500)
DNA (228bp) protein (76aa)

This feature has no annotations

66_006_scaffold_30_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3615..5321)
DNA (1707bp) protein (569aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:EES48133.1}; EC=3.6.3.- {ECO:0000313|EMBL:EES48133.1};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V5F6_CLOBA
lipid A export ATP-binding/permease protein MsbA; K06147 ATP-binding cassette, subfamily B, bacterial
66_006_scaffold_30_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5347..6018)
DNA (672bp) protein (224aa)
ssuB1; aliphatic sulfonates import ATP-binding protein SsuB 2 (EC:3.6.3.-)
UPI0003D66C85 related cluster n=1 Tax=unknown RepID=UPI0003D66C85
ABC transporter {ECO:0000313|EMBL:KHD15631.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
66_006_scaffold_30_8
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6030..6782)
DNA (753bp) protein (251aa)
ABC transporter, permease protein n=2 Tax=Clostridium botulinum B RepID=B2TNC2_CLOBB
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:ACD23365.1}; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:CDH91444.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
66_006_scaffold_30_9
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6757..7731)
DNA (975bp) protein (325aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LPV3_9CLOT
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:AGF54900.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
66_006_scaffold_30_10
unknown

Not on your lists

8053..8352
DNA (300bp) protein (100aa)

This feature has no annotations

66_006_scaffold_30_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8425..8889)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F8N3_9CLOT
hypothetical protein; K09770 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL06774.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
66_006_scaffold_30_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8991..10124
DNA (1134bp) protein (378aa)
Putative DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ELA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AIY84841.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
DEAD/DEAH box helicase
66_006_scaffold_30_13
unknown

Not on your lists

comp(10160..10291)
DNA (132bp) protein (44aa)

This feature has no annotations

66_006_scaffold_30_14
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10460..13081
DNA (2622bp) protein (874aa)
ATPase P; K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
Putative potassium/sodium efflux P-type ATPase, fungal-type n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QPR1_9CLOT
Putative potassium/sodium efflux P-type ATPase, fungal-type {ECO:0000313|EMBL:EKY29552.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
66_006_scaffold_30_15
Bacillus sp. SG-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13123..13656)
DNA (534bp) protein (178aa)
GCN5 family N-acetyltransferase n=1 Tax=Bacillus sp. AP8 RepID=UPI0003093168
Uncharacterized protein {ECO:0000313|EMBL:EDL64508.1}; TaxID=161544 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. SG-1.;"
GNAT family acetyltransferase
66_006_scaffold_30_16
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13775..14248
DNA (474bp) protein (158aa)
msrA; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M8W8_9CLOT
66_006_scaffold_30_17
unknown

Not on your lists

comp(14376..14918)
DNA (543bp) protein (181aa)

This feature has no annotations

66_006_scaffold_30_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14934..16826)
DNA (1893bp) protein (631aa)
membrane protein n=1 Tax=Clostridium botulinum RepID=UPI00036F968B
Fusaric acid resistance-like family protein {ECO:0000313|EMBL:AIY79778.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
66_006_scaffold_30_19
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17001..18038)
DNA (1038bp) protein (346aa)
Peptidase M42 family protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJ65_ALKOO
peptidase M42 family protein
Peptidase M42 family protein {ECO:0000313|EMBL:ABW19847.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
66_006_scaffold_30_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18113..19990)
DNA (1878bp) protein (626aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=2 Tax=Clostridium difficile RepID=T2YYG2_CLODI
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQE70230.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
htpG; heat shock protein 90; K04079 molecular chaperone HtpG
66_006_scaffold_30_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20089..20700)
DNA (612bp) protein (204aa)
UPI0003D66826 related cluster n=1 Tax=unknown RepID=UPI0003D66826
Uncharacterized protein {ECO:0000313|EMBL:KJZ92872.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
66_006_scaffold_30_22
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20743..21243)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KMJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB74730.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
66_006_scaffold_30_23
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21253..21801)
DNA (549bp) protein (183aa)
Conserved hypothetical phage-related protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KXT0_9CLOT
Conserved hypothetical phage-related protein {ECO:0000313|EMBL:CDB74731.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
phage-like protein
66_006_scaffold_30_24
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22039..22374
DNA (336bp) protein (112aa)
Transcriptional regulator PadR family protein n=1 Tax=Clostridium intestinale URNW RepID=U2NKN4_9CLOT
Transcriptional regulator PadR family protein {ECO:0000313|EMBL:ERK29698.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
transcriptional regulator PadR family
66_006_scaffold_30_25
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22362..23054
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q1M9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK29954.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
66_006_scaffold_30_26
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23141..24091)
DNA (951bp) protein (317aa)
Polysaccharide deacetylase family protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KVZ0_9CLOT
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:CDB74076.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
polysaccharide deacetylase
66_006_scaffold_30_27
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24195..24500)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY25115.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
66_006_scaffold_30_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24511..25713)
DNA (1203bp) protein (401aa)
DHHA1 domain protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BL21_CLOPF
DHHA1 domain protein {ECO:0000313|EMBL:EDS79527.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
DHH domain-containing protein; K07050
66_006_scaffold_30_29
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25706..27223)
DNA (1518bp) protein (506aa)
Transcriptional regulator, GntR family with aminotransferase domain containing protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4C2_9CLOT
Transcriptional regulator, GntR family with aminotransferase domain containing protein {ECO:0000313|EMBL:EHJ01263.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
yisV2; HTH-type transcriptional regulator YisV
Displaying items 1-30 of 117 in total

View Taxonomy