ggKbase home page

66_006_scaffold_166

Search features with annotation key words

Displaying 25 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_006_scaffold_166_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28..792)
DNA (765bp) protein (255aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BIV7_CLOPF
66_006_scaffold_166_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(865..1740)
DNA (876bp) protein (292aa)
dapA; dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=DAPA_CLOPE
66_006_scaffold_166_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1765..2742)
DNA (978bp) protein (326aa)
asd; aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XJ57_CLOPE
66_006_scaffold_166_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2944..3216
DNA (273bp) protein (91aa)
Small acid-soluble spore protein beta n=10 Tax=Clostridium perfringens RepID=H7CX36_CLOPF
small acid-soluble spore protein beta
Small acid-soluble spore protein beta {ECO:0000313|EMBL:EIA16750.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_006_scaffold_166_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3283..4005
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TP58_CLOP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG87433.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
66_006_scaffold_166_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4021..4980
DNA (960bp) protein (320aa)
33 kDa chaperonin n=9 Tax=Clostridium perfringens RepID=HSLO_CLOP1
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_006_scaffold_166_trna_1
unknown

Not on your lists

5041..5113
DNA (73bp)
transferRNA Phe
66_006_scaffold_166_trna_2
unknown

Not on your lists

5122..5193
DNA (72bp)
transferRNA Gly
66_006_scaffold_166_trna_3
unknown

Not on your lists

5200..5270
DNA (71bp)
transferRNA Gly
66_006_scaffold_166_trna_4
unknown

Not on your lists

5279..5350
DNA (72bp)
transferRNA Cys
66_006_scaffold_166_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5461..5838)
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1R332_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25302.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
66_006_scaffold_166_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6137..6691
DNA (555bp) protein (185aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=Q8XJ62_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81605.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_006_scaffold_166_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6857..7411
DNA (555bp) protein (185aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=H7CXU0_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA16745.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_006_scaffold_166_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7540..8520)
DNA (981bp) protein (327aa)
BadF/BadG/BcrA/BcrD ATPase family protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RHP8_CLOPF
BadF/BadG/BcrA/BcrD ATPase family protein {ECO:0000313|EMBL:EDT26519.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
BadF/BadG/BcrA/BcrD ATPase
66_006_scaffold_166_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8775..9470)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BIW7_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDS80340.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein
66_006_scaffold_166_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9605..10483
DNA (879bp) protein (293aa)
Putative sporulation protein YtxC n=3 Tax=Clostridium perfringens RepID=B1BIW8_CLOPF
Putative sporulation protein YtxC {ECO:0000313|EMBL:EDS80228.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
sporulation protein YtxC
66_006_scaffold_166_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10765..11286
DNA (522bp) protein (174aa)
Translation initiation factor IF-3 n=5 Tax=Clostridium perfringens RepID=H7CXT6_CLOPF
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
66_006_scaffold_166_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11308..11505
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=9 Tax=Clostridium perfringens RepID=RL35_CLOP1
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_006_scaffold_166_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11535..11894
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=10 Tax=Clostridium perfringens RepID=RL20_CLOP1
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
66_006_scaffold_166_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12123..13463
DNA (1341bp) protein (447aa)
TrkH family potassium uptake protein n=5 Tax=Clostridium perfringens RepID=H7CXT3_CLOPF
TrkH family potassium uptake protein; K03498 trk system potassium uptake protein TrkH
TrkH family potassium uptake protein {ECO:0000313|EMBL:EIA16738.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_006_scaffold_166_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13486..14151
DNA (666bp) protein (222aa)
Probable potassium uptake system protein n=10 Tax=Clostridium perfringens RepID=Q8XJ71_CLOPE
potassium uptake protein; K03499 trk system potassium uptake protein TrkA
Putative potassium uptake protein {ECO:0000313|EMBL:EIA16737.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_006_scaffold_166_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14177..14950
DNA (774bp) protein (258aa)
RNA methyltransferase, TrmH family n=4 Tax=Clostridium perfringens RepID=B1RB42_CLOPF
RNA methyltransferase, TrmH family; K03437 RNA methyltransferase, TrmH family
Probable rRNA methylase {ECO:0000313|EMBL:BAB81595.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_006_scaffold_166_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15563..16582
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Phenylalanine--tRNA ligase alpha subunit n=6 Tax=Clostridium perfringens RepID=SYFA_CLOP1
66_006_scaffold_166_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16606..18987
DNA (2382bp) protein (794aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Clostridium perfringens RepID=B1RB44_CLOPF
66_006_scaffold_166_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19068..20129
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RB45_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT22553.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
hypothetical protein; K09888 cell division protein ZapA
Displaying 25 items

View Taxonomy