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66_008_scaffold_228

Search features with annotation key words

Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_008_scaffold_228_1
unknown

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comp(2..94)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y604_9CLOT
66_008_scaffold_228_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(346..726)
DNA (381bp) protein (127aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
endoribonuclease endoA (EC:3.1.-.-); K07171 mRNA interferase [EC:3.1.-.-]
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HIJ0_9CLOT
66_008_scaffold_228_3
unknown

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comp(708..938)
DNA (231bp) protein (77aa)

This feature has no annotations

66_008_scaffold_228_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1061..1690)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4N1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99516.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
membrane associated protein
66_008_scaffold_228_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1749..3251)
DNA (1503bp) protein (501aa)
YjeF domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIJ7_9CLOT
YjeF-related family protein {ECO:0000313|EMBL:AIY83556.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
YjeF family protein
66_008_scaffold_228_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3255..3632)
DNA (378bp) protein (126aa)
acpS; 4'-phosphopantetheinyl transferase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
4''''-phosphopantetheinyl transferase n=1 Tax=Clostridium beijerinckii RepID=UPI0003136D92
66_008_scaffold_228_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3663..3989)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CUX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AIY84663.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
hypothetical protein
66_008_scaffold_228_8
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4380..4739)
DNA (360bp) protein (120aa)
Single-stranded DNA-binding protein n=2 Tax=environmental samples RepID=R6FRM9_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ssb2; single-stranded DNA-binding protein 3
66_008_scaffold_228_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4943..5782)
DNA (840bp) protein (280aa)
YihY family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V006_CLOBA
Ribonuclease BN {ECO:0000313|EMBL:KJU72316.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
YihY family protein; K07058 membrane protein
66_008_scaffold_228_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6051..6923
DNA (873bp) protein (291aa)
galactose mutarotase n=1 Tax=Clostridium beijerinckii RepID=UPI0002DDD39D
Galactose mutarotase {ECO:0000313|EMBL:KJU72317.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
aldose 1-epimerase
66_008_scaffold_228_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6939..9233)
DNA (2295bp) protein (765aa)
Rad3-like DNA helicase (EC:3.6.4.12)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XV74_9CLOT
ATP-dependent helicase {ECO:0000313|EMBL:KJU72318.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
66_008_scaffold_228_12
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9431..10021)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F6P3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG00693.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
66_008_scaffold_228_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10509..10754
DNA (246bp) protein (82aa)
Transcriptional regulator, AbrB family n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAQ9_9CLOT
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EHJ02318.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
AbrB family transcriptional regulator; K06284 transcriptional pleiotropic regulator of transition state genes
66_008_scaffold_228_14
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10868..11713)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
YraL family putative S-adenosylmethionine-dependent methyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH17_9CLOT
66_008_scaffold_228_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11713..12468)
DNA (756bp) protein (252aa)
Methyltransferase small n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9L9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD15459.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
small; methyltransferase Small
66_008_scaffold_228_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12804..14036)
DNA (1233bp) protein (411aa)
Putative SagA protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EHM5_9CLOT
Putative SagA protein {ECO:0000313|EMBL:CDG00697.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
SagA protein
66_008_scaffold_228_trna_1
unknown

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14293..14365
DNA (73bp)
transferRNA Pro
66_008_scaffold_228_17
unknown

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comp(14405..14509)
DNA (105bp) protein (35aa)

This feature has no annotations

66_008_scaffold_228_18
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14829..15473
DNA (645bp) protein (215aa)
Putative HAD-superfamily hydrolase, subfamily IA,variant 3 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EWU8_9CLOT
Putative HAD-superfamily hydrolase, subfamily IA,variant 3 {ECO:0000313|EMBL:CDG00701.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
66_008_scaffold_228_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15506..16252)
DNA (747bp) protein (249aa)
prsA2; foldase protein PrsA (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Foldase protein PrsA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXM3_CLOSA
66_008_scaffold_228_20
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16406..16858
DNA (453bp) protein (151aa)
putative peroxiredoxin bcp; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Peroxiredoxin bcp n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C724_9CLOT
Peroxiredoxin bcp {ECO:0000313|EMBL:EOR25169.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
66_008_scaffold_228_trna_2
unknown

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comp(16899..16971)
DNA (73bp)
transferRNA Phe
Displaying 22 items

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