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66_008_scaffold_169

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_008_scaffold_169_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..864)
DNA (864bp) protein (288aa)
Transposase, IS605 OrfB family n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RGH0_CLOPF
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EDT26958.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
IS605 family transposase OrfB
66_008_scaffold_169_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1462..3537)
DNA (2076bp) protein (692aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Serine/threonine protein kinase n=1 Tax=Clostridium perfringens F262 RepID=H7CXD3_CLOPF
Serine/threonine protein kinase {ECO:0000313|EMBL:EIA16588.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_008_scaffold_169_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3539..4258)
DNA (720bp) protein (240aa)
protein phosphatase 2C; K01090 protein phosphatase [EC:3.1.3.16]
Protein phosphatase family protein n=6 Tax=Clostridium perfringens RepID=H7CXD4_CLOPF
Protein phosphatase family protein {ECO:0000313|EMBL:EIA16589.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_008_scaffold_169_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4271..5314)
DNA (1044bp) protein (348aa)
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=RLMN_CLOPS
66_008_scaffold_169_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5346..6674)
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
RNA-binding Sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase B n=4 Tax=Clostridium perfringens RepID=B1R8F6_CLOPF
66_008_scaffold_169_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6685..7380)
DNA (696bp) protein (232aa)
Putative neutral zinc metallopeptidase n=2 Tax=Clostridium perfringens RepID=B1R8F5_CLOPF
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:EDT23449.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
neutral zinc metallopeptidase; K06973
66_008_scaffold_169_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7398..8327)
DNA (930bp) protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase n=3 Tax=Clostridium perfringens RepID=H7CXD8_CLOPF
66_008_scaffold_169_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8347..8790)
DNA (444bp) protein (148aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Peptide deformylase n=5 Tax=Clostridium perfringens RepID=Q0TPL0_CLOP1
66_008_scaffold_169_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8804..10999)
DNA (2196bp) protein (732aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
Primosomal protein N n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RHW8_CLOPF
66_008_scaffold_169_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11038..12225)
DNA (1188bp) protein (396aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=2 Tax=Clostridium perfringens RepID=B1RHW9_CLOPF
Probable pantothenate metabolism flavoprotein {ECO:0000313|EMBL:BAB81452.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
66_008_scaffold_169_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12231..12443)
DNA (213bp) protein (71aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E st
DNA-directed RNA polymerase subunit omega n=11 Tax=Clostridium perfringens RepID=RPOZ_CLOP1
66_008_scaffold_169_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12424..13071)
DNA (648bp) protein (216aa)
gmk; guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase; EC=2.7.4.8;; GMP kinase; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Guanylate kinase n=6 Tax=Clostridium perfringens RepID=KGUA_CLOPE
66_008_scaffold_169_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13064..13333)
DNA (270bp) protein (90aa)
UPF0296 protein CPR_1720 n=11 Tax=Clostridium perfringens RepID=Y1720_CLOPS
hypothetical protein; K09777 hypothetical protein
UPF0296 protein HA1_10556 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_008_scaffold_169_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13347..14231)
DNA (885bp) protein (295aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CXE5_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT14034.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
66_008_scaffold_169_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14451..15848)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=H7CXE6_CLOPF
hypothetical protein; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease
Uncharacterized protein {ECO:0000313|EMBL:EIA16601.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_008_scaffold_169_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16105..17088)
DNA (984bp) protein (328aa)
L-asparaginase (EC:3.5.1.1); K01424 L-asparaginase [EC:3.5.1.1]
L-asparaginase {ECO:0000313|EMBL:EDT14044.1}; EC=3.5.1.1 {ECO:0000313|EMBL:EDT14044.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L-asparaginase n=9 Tax=Clostridium perfringens RepID=Q0TPK2_CLOP1
66_008_scaffold_169_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17439..18914)
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Stage IV sporulation protein A n=9 Tax=Clostridium perfringens RepID=H7CXE8_CLOPF
spoIVA; stage IV sporulation protein A; K06398 stage IV sporulation protein A
66_008_scaffold_169_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19243..20238)
DNA (996bp) protein (332aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=8 Tax=Clostridium perfringens RepID=GPDA_CLOP1
66_008_scaffold_169_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20243..21559)
DNA (1317bp) protein (439aa)
GTPase Der n=11 Tax=Clostridium perfringens RepID=DER_CLOP1
engA; GTP-binding protein EngA; K03977 GTP-binding protein
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_008_scaffold_169_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21562..22899)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q8XJK0_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT23437.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
66_008_scaffold_169_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23226..24941)
DNA (1716bp) protein (572aa)
sensory box histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Sensory box histidine kinase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQC4_CLOPF
66_008_scaffold_169_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24955..25659)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RHQ7_CLOPF
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
hypothetical protein; K05810 conserved hypothetical protein
66_008_scaffold_169_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25825..26274)
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=9 Tax=Clostridium perfringens RepID=NRDR_CLOP1
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
66_008_scaffold_169_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26336..26608)
DNA (273bp) protein (91aa)
PRC-barrel domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CXF5_CLOPF
PRC-barrel domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81466.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Displaying 24 items

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