ggKbase home page

66_008_scaffold_147

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_008_scaffold_147_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3..230
DNA (228bp) protein (76aa)
UPI0003D641C5 related cluster n=1 Tax=unknown RepID=UPI0003D641C5
Uncharacterized protein {ECO:0000313|EMBL:ETI84354.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_147_2
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(281..772)
DNA (492bp) protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D66DE4 related cluster n=1 Tax=unknown RepID=UPI0003D66DE4
dihydrofolate reductase
66_008_scaffold_147_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(772..1563)
DNA (792bp) protein (264aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45]
UPI0003D5B4BD related cluster n=1 Tax=unknown RepID=UPI0003D5B4BD
66_008_scaffold_147_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1560..3374)
DNA (1815bp) protein (605aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
UPI0003D692A5 related cluster n=1 Tax=unknown RepID=UPI0003D692A5
Uncharacterized protein {ECO:0000313|EMBL:KGF10990.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
66_008_scaffold_147_5
unknown

Not on your lists

comp(3395..3502)
DNA (108bp) protein (36aa)

This feature has no annotations

66_008_scaffold_147_6
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

4158..4838
DNA (681bp) protein (227aa)
UPI0003D5CD7C related cluster n=1 Tax=unknown RepID=UPI0003D5CD7C
DNA-binding response regulator {ECO:0000313|EMBL:ETI89001.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
DNA-binding response regulator
66_008_scaffold_147_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

4822..6291
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D624E9 related cluster n=1 Tax=unknown RepID=UPI0003D624E9
integral membrane sensor signal transduction histidine kinase
66_008_scaffold_147_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6410..7264
DNA (855bp) protein (285aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D62421 related cluster n=1 Tax=unknown RepID=UPI0003D62421
cobalt ABC transporter ATPase; K02006 cobalt/nickel transport system ATP-binding protein
66_008_scaffold_147_9
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7240..8139
DNA (900bp) protein (300aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D6592C related cluster n=1 Tax=unknown RepID=UPI0003D6592C
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein
66_008_scaffold_147_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8139..8939
DNA (801bp) protein (267aa)
UPI0003D5DA7C related cluster n=1 Tax=unknown RepID=UPI0003D5DA7C
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
cobalt transport protein; K02008 cobalt/nickel transport system permease protein
66_008_scaffold_147_11
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8927..9733
DNA (807bp) protein (269aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
UPI0003D5F06B related cluster n=1 Tax=unknown RepID=UPI0003D5F06B
66_008_scaffold_147_12
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

10079..10714
DNA (636bp) protein (212aa)
UPI0003D5DE96 related cluster n=1 Tax=unknown RepID=UPI0003D5DE96
Uncharacterized protein {ECO:0000313|EMBL:ETI86324.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
66_008_scaffold_147_13
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

10785..11417
DNA (633bp) protein (211aa)
UPI0003D5FE1E related cluster n=1 Tax=unknown RepID=UPI0003D5FE1E
Uncharacterized protein {ECO:0000313|EMBL:ETI86323.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_147_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11449..13197
DNA (1749bp) protein (583aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3]
UPI0003D5F09D related cluster n=1 Tax=unknown RepID=UPI0003D5F09D
2-oxoglutarate ferredoxin oxidoreductase subunit alpha {ECO:0000313|EMBL:KGF10998.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
66_008_scaffold_147_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13197..14060
DNA (864bp) protein (288aa)
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
UPI0003D69ACC related cluster n=1 Tax=unknown RepID=UPI0003D69ACC
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:ETI86321.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_147_16
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14241..15005
DNA (765bp) protein (255aa)
UPI0003D606E1 related cluster n=1 Tax=unknown RepID=UPI0003D606E1
Toluene tolerance ABC efflux transporter, permease {ECO:0000313|EMBL:ETI86320.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K02066 putative ABC transport system permease protein
66_008_scaffold_147_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15015..15767
DNA (753bp) protein (251aa)
UPI0003D5ADB5 related cluster n=1 Tax=unknown RepID=UPI0003D5ADB5
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETI86319.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
ABC transporter; K02065 putative ABC transport system ATP-binding protein
66_008_scaffold_147_18
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15764..16876
DNA (1113bp) protein (371aa)
UPI0003D64447 related cluster n=1 Tax=unknown RepID=UPI0003D64447
Mce-related protein {ECO:0000313|EMBL:ETI86318.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K02067 putative ABC transport system substrate-binding protein
66_008_scaffold_147_19
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16904..18556
DNA (1653bp) protein (551aa)
UPI0003D67551 related cluster n=1 Tax=unknown RepID=UPI0003D67551
Uncharacterized protein {ECO:0000313|EMBL:ETI86317.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
type I secretion outer membrane protein
66_008_scaffold_147_20
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18599..22861
DNA (4263bp) protein (1421aa)
UPI0003D593BD related cluster n=1 Tax=unknown RepID=UPI0003D593BD
Uncharacterized protein {ECO:0000313|EMBL:KGF11003.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypothetical protein; K09800 hypothetical protein
66_008_scaffold_147_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22871..23503
DNA (633bp) protein (211aa)
UPI0003D687B6 related cluster n=1 Tax=unknown RepID=UPI0003D687B6
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
RNA polymerase sigma factor; K03091 RNA polymerase sporulation-specific sigma factor
66_008_scaffold_147_22
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23570..24184
DNA (615bp) protein (205aa)
UPI0003D5D136 related cluster n=1 Tax=unknown RepID=UPI0003D5D136
Uncharacterized protein {ECO:0000313|EMBL:KGF11005.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypothetical protein
66_008_scaffold_147_23
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24253..26469
DNA (2217bp) protein (739aa)
UPI0003D5EDB7 related cluster n=1 Tax=unknown RepID=UPI0003D5EDB7
Uncharacterized protein {ECO:0000313|EMBL:ETI87378.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
surface antigen (D15); K07277 outer membrane protein
66_008_scaffold_147_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26530..27798
DNA (1269bp) protein (423aa)
UPI0003D5FD1F related cluster n=1 Tax=unknown RepID=UPI0003D5FD1F
Uncharacterized protein {ECO:0000313|EMBL:ETI87377.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
66_008_scaffold_147_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27822..28343
DNA (522bp) protein (174aa)
UPI0003D5F6F2 related cluster n=1 Tax=unknown RepID=UPI0003D5F6F2
Outer membrane protein {ECO:0000313|EMBL:ETI87376.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
outer membrane protein; K06142 outer membrane protein
66_008_scaffold_147_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28347..29306
DNA (960bp) protein (320aa)
UPI0003D5DF9C related cluster n=1 Tax=unknown RepID=UPI0003D5DF9C
Uncharacterized protein {ECO:0000313|EMBL:ETI87375.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
66_008_scaffold_147_27
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29296..29787
DNA (492bp) protein (164aa)
UPI0003D63F7F related cluster n=1 Tax=unknown RepID=UPI0003D63F7F
Outer membrane protein {ECO:0000313|EMBL:ETI87374.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
outer membrane protein; K06142 outer membrane protein
66_008_scaffold_147_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29787..30809
DNA (1023bp) protein (341aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UPI0003D645A8 related cluster n=1 Tax=unknown RepID=UPI0003D645A8
66_008_scaffold_147_29
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

30852..31223
DNA (372bp) protein (124aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
UPI0003D685FD related cluster n=1 Tax=unknown RepID=UPI0003D685FD
Uncharacterized protein {ECO:0000313|EMBL:ETI87372.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Displaying 29 items

View Taxonomy