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66_008_scaffold_194

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_008_scaffold_194_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(35..1615)
DNA (1581bp) protein (527aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
UPI0003D6645B related cluster n=1 Tax=unknown RepID=UPI0003D6645B
66_008_scaffold_194_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1679..1792)
DNA (114bp) protein (38aa)
Uncharacterized protein {ECO:0000313|EMBL:ETI86616.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_194_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1873..2793)
DNA (921bp) protein (307aa)
UPI0003D674DB related cluster n=1 Tax=unknown RepID=UPI0003D674DB
Uncharacterized protein {ECO:0000313|EMBL:KGF11761.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
putative LysR family transcriptional regulator
66_008_scaffold_194_4
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2940..4277)
DNA (1338bp) protein (446aa)
UPI0003D64C53 related cluster n=1 Tax=unknown RepID=UPI0003D64C53
Putrescine-ornithine antiporter {ECO:0000313|EMBL:ETI86618.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
potE; putrescine transporter; K03756 putrescine:ornithine antiporter
66_008_scaffold_194_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4333..6645)
DNA (2313bp) protein (771aa)
speF2; ornithine decarboxylase (EC:4.1.1.17); K01581 ornithine decarboxylase [EC:4.1.1.17]
UPI0003D5A324 related cluster n=1 Tax=unknown RepID=UPI0003D5A324
Ornithine decarboxylase, inducible {ECO:0000313|EMBL:ETI86619.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_194_6
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6960..7445)
DNA (486bp) protein (162aa)
UPI0003D689BC related cluster n=1 Tax=unknown RepID=UPI0003D689BC
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA
66_008_scaffold_194_7
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7550..8539)
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
tRNA-dihydrouridine synthase n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D287_9FIRM
tRNA-dihydrouridine synthase
66_008_scaffold_194_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8523..9287)
DNA (765bp) protein (255aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
type III pantothenate kinase; K03525 type III pantothenate kinase [EC:2.7.1.33]
UPI0003D68711 related cluster n=1 Tax=unknown RepID=UPI0003D68711
66_008_scaffold_194_9
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9299..10282)
DNA (984bp) protein (328aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Dialister micraerophilus RepID=F2BVU0_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
66_008_scaffold_194_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10421..12418)
DNA (1998bp) protein (666aa)
ATP-dependent zinc metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
UPI0003D5F083 related cluster n=1 Tax=unknown RepID=UPI0003D5F083
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:ETI86205.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
66_008_scaffold_194_11
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12495..13034)
DNA (540bp) protein (180aa)
UPI0003D59B8A related cluster n=1 Tax=unknown RepID=UPI0003D59B8A
Hypoxanthine phosphoribosyl transferase {ECO:0000313|EMBL:ETI85997.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypoxanthine phosphoribosyltransferase
66_008_scaffold_194_12
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13000..14391)
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
UPI0003D682B8 related cluster n=1 Tax=unknown RepID=UPI0003D682B8
66_008_scaffold_194_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14388..15281)
DNA (894bp) protein (298aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11769.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
66_008_scaffold_194_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15334..15801)
DNA (468bp) protein (156aa)
UPI0003D64DBB related cluster n=1 Tax=unknown RepID=UPI0003D64DBB
Uncharacterized protein {ECO:0000313|EMBL:KGF11770.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
general stress protein 13; K07571 S1 RNA binding domain protein
66_008_scaffold_194_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15878..16231)
DNA (354bp) protein (118aa)
UPI0003D5A175 related cluster n=1 Tax=unknown RepID=UPI0003D5A175
Uncharacterized protein {ECO:0000313|EMBL:ETI86461.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
septum formation initiator
66_008_scaffold_194_16
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16329..16700)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Megamonas RepID=D4KEE6_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L12P
66_008_scaffold_194_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(16730..17260)
DNA (531bp) protein (177aa)
UPI0003D67DB4 related cluster n=1 Tax=unknown RepID=UPI0003D67DB4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
66_008_scaffold_194_18
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(17442..18149)
DNA (708bp) protein (236aa)
UPI0003D60A86 related cluster n=1 Tax=unknown RepID=UPI0003D60A86
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
66_008_scaffold_194_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18181..18606)
DNA (426bp) protein (142aa)
UPI0003D5A812 related cluster n=1 Tax=unknown RepID=UPI0003D5A812
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
66_008_scaffold_194_20
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18678..19229)
DNA (552bp) protein (184aa)
UPI0003D60133 related cluster n=1 Tax=unknown RepID=UPI0003D60133
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG
66_008_scaffold_194_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19239..19466)
DNA (228bp) protein (76aa)
UPI0003D5D105 related cluster n=1 Tax=unknown RepID=UPI0003D5D105
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
66_008_scaffold_194_22
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(19503..19652)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGN8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K02913 large subunit ribosomal protein L33
66_008_scaffold_194_23
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(19904..20254)
DNA (351bp) protein (117aa)
UPI0003D5AE39 related cluster n=1 Tax=unknown RepID=UPI0003D5AE39
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
66_008_scaffold_194_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(20273..20470)
DNA (198bp) protein (66aa)
UPI0003D607F7 related cluster n=1 Tax=unknown RepID=UPI0003D607F7
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
LSU ribosomal protein L35P
66_008_scaffold_194_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(20482..20886)
DNA (405bp) protein (135aa)
UPI0003D67593 related cluster n=1 Tax=unknown RepID=UPI0003D67593
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
66_008_scaffold_194_26
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21370..21678
DNA (309bp) protein (103aa)
UPI0003D687A9 related cluster n=1 Tax=unknown RepID=UPI0003D687A9
UPF0348 protein HMPREF1633_04450 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypothetical protein
Displaying 26 items

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