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66_010_scaffold_119

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_010_scaffold_119_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31..300)
DNA (270bp) protein (90aa)
Membrane protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FSL1_CLOPA
Membrane protein {ECO:0000313|EMBL:ETD67289.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
66_010_scaffold_119_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(302..2293)
DNA (1992bp) protein (664aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ligA; DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HC55_9CLOT
66_010_scaffold_119_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2314..4563)
DNA (2250bp) protein (750aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
ATP-dependent DNA helicase PcrA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8B7_9CLOT
66_010_scaffold_119_4
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4639..5316)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIN0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY27550.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
66_010_scaffold_119_5
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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5457..5900
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D5F0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI91553.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
66_010_scaffold_119_6
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5969..6643
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EJL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGK83838.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
hypothetical protein
66_010_scaffold_119_7
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6710..8371
DNA (1662bp) protein (554aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18]
Glutamine--tRNA ligase n=4 Tax=Clostridium perfringens RepID=SYQ_CLOP1
66_010_scaffold_119_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8379..8771
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8U0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99325.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
66_010_scaffold_119_9
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8814..10469)
DNA (1656bp) protein (552aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FB28_9CLOT
66_010_scaffold_119_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11157..11873)
DNA (717bp) protein (239aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
rluB1; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.19)
Pseudouridine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGR2_CLOBU
66_010_scaffold_119_11
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12064..12753)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XYF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00622.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
lytic murein transglycosylase
66_010_scaffold_119_12
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12764..14767)
DNA (2004bp) protein (668aa)
Putative Two component regulator three Y motif protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EWG3_9CLOT
Putative Two component regulator three Y motif protein {ECO:0000313|EMBL:CDG00551.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
triple tyrosine motif-containing protein
66_010_scaffold_119_13
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14906..15391)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FT16_CLOPA
UPF0178 protein X276_20440 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein; K09768 hypothetical protein
66_010_scaffold_119_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15354..16703)
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pgi; glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase n=5 Tax=Clostridium butyricum RepID=B1R095_CLOBU
66_010_scaffold_119_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16996..18282)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96581.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
lipid A core-O-antigen ligase-like enyme
66_010_scaffold_119_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18449..19990)
DNA (1542bp) protein (514aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKX0_CLOSA
66_010_scaffold_119_17
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20054..21508)
DNA (1455bp) protein (485aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
guaB; inosine 5'-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Clostridium colicanis 209318 RepID=N9XXK4_9CLOT
66_010_scaffold_119_18
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21857..22969)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00631.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
66_010_scaffold_119_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22979..23515)
DNA (537bp) protein (179aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XYG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AIY82296.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_010_scaffold_119_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23534..24091)
DNA (558bp) protein (186aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XLS1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AIY83639.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_010_scaffold_119_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24125..24727)
DNA (603bp) protein (201aa)
Fimbrial assembly protein PilO n=1 Tax=Clostridium intestinale URNW RepID=U2NTQ9_9CLOT
Pilus assembly, PilO family protein {ECO:0000313|EMBL:AIY84089.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_010_scaffold_119_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24717..25274)
DNA (558bp) protein (186aa)
Fimbrial assembly family protein {ECO:0000313|EMBL:AIY84750.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_010_scaffold_119_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25276..26283)
DNA (1008bp) protein (336aa)
Type IV pilus assembly protein PilM n=1 Tax=Clostridium colicanis 209318 RepID=N9WCA8_9CLOT
Type IV pilus assembly PilM, family protein {ECO:0000313|EMBL:AIY84827.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
type IV pilus assembly protein PilM
66_010_scaffold_119_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26297..27049)
DNA (753bp) protein (251aa)
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
Peptidase A24 n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G6H1_CLOPA
Type IV leader peptidase family protein {ECO:0000313|EMBL:AIY84699.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_010_scaffold_119_25
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27123..27545)
DNA (423bp) protein (141aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AIY83906.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
pilin
Displaying 25 items

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