ggKbase home page

66_010_scaffold_128

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_010_scaffold_128_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..531
DNA (531bp) protein (177aa)
Sporulation protein YunB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMW0_CLOSA
yunB; sporulation protein YunB
Sporulation protein YunB {ECO:0000313|EMBL:AGX42144.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
66_010_scaffold_128_2
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(916..1440)
DNA (525bp) protein (175aa)
hpt; hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase n=1 Tax=Clostridium intestinale URNW RepID=U2Q512_9CLOT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ERK31209.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
66_010_scaffold_128_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1869..3665
DNA (1797bp) protein (599aa)
GTPase HflX n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MR40_CLOSA
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
hflX; GTPase HflX
66_010_scaffold_128_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3848..4750
DNA (903bp) protein (301aa)
Nucleotidyltransferase domain protein n=2 Tax=Clostridium botulinum B RepID=B2TMM0_CLOBB
Nucleotidyltransferase domain protein {ECO:0000313|EMBL:AIY78665.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
nucleotidyltransferase domain protein
66_010_scaffold_128_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4767..6182
DNA (1416bp) protein (472aa)
GntR-family transcritional regulator n=2 Tax=Clostridium botulinum RepID=B2V2R8_CLOBA
GntR family transcriptional regulator {ECO:0000313|EMBL:KJU70850.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
GntR family transcriptional regulator
66_010_scaffold_128_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6170..6820
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TIP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ51205.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
66_010_scaffold_128_7
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6897..7634
DNA (738bp) protein (246aa)
Probable transcriptional regulatory protein A500_15910 n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BUH1_9CLOT
Probable transcriptional regulatory protein A500_15910 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
66_010_scaffold_128_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7772..8494)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EK79_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01652.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
66_010_scaffold_128_9
unknown

Not on your lists

8637..8777
DNA (141bp) protein (47aa)

This feature has no annotations

66_010_scaffold_128_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8818..9147)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2UXE7_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07746.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
66_010_scaffold_128_11
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9403..10278
DNA (876bp) protein (292aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G0J0_9CLOT
Radical SAM protein {ECO:0000313|EMBL:CDM68900.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
putative Fe-S oxidoreductase
66_010_scaffold_128_12
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10466..15046
DNA (4581bp) protein (1527aa)
Alpha-1,3-galactosidase B domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=E7FY30_ERYRH
Alpha-1,3-galactosidase B domain protein {ECO:0000313|EMBL:EFY08404.1}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
pectin lyase fold-containing protein
66_010_scaffold_128_13
unknown

Not on your lists

15325..15591
DNA (267bp) protein (89aa)

This feature has no annotations

66_010_scaffold_128_14
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15656..16033
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z9E3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGR78760.1}; TaxID=1384049 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus manganicus DSM 26584.;"
hypothetical protein
66_010_scaffold_128_15
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16157..17056)
DNA (900bp) protein (300aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHI98181.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EHI98181.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYC0_9CLOT
short-chain dehydrogenase/reductase SDR
66_010_scaffold_128_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17211..17792
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MST7_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43849.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
66_010_scaffold_128_17
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17956..18567
DNA (612bp) protein (204aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FN47_9CLOT
66_010_scaffold_128_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18579..19613
DNA (1035bp) protein (345aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBG0_9CLOT
66_010_scaffold_128_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19628..20653
DNA (1026bp) protein (342aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Clostridium botulinum E RepID=QUEA_CLOBA
66_010_scaffold_128_20
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20666..21805
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F0E6_9CLOT
66_010_scaffold_128_21
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21905..22174
DNA (270bp) protein (90aa)
Preprotein translocase, YajC subunit n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEU5_9CLOT
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EKY26200.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
yajC; preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
66_010_scaffold_128_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22225..22596
DNA (372bp) protein (124aa)
membrane protein n=1 Tax=Clostridium botulinum RepID=UPI000378E61E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES48013.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
66_010_scaffold_128_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22679..23920
DNA (1242bp) protein (414aa)
Protein export protein SecD n=2 Tax=Clostridium botulinum B RepID=B2TMZ7_CLOBB
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
protein export protein SecD; K12257 SecD/SecF fusion protein
66_010_scaffold_128_24
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23927..24784
DNA (858bp) protein (286aa)
Protein-export membrane protein SecF n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C0D6_9CLOT
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
protein export protein SecD; K12257 SecD/SecF fusion protein
66_010_scaffold_128_25
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25103..25960
DNA (858bp) protein (286aa)
recJ1; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BUA9_9CLOT
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EOR20719.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
66_010_scaffold_128_26
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26031..26528
DNA (498bp) protein (166aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
apt; adenine phosphoribosyltransferase Apt (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FN40_9CLOT
Displaying 26 items

View Taxonomy