ggKbase home page

66_010_scaffold_287

Search features with annotation key words

Displaying 16 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_010_scaffold_287_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(163..1356)
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=2 Tax=Clostridium difficile RepID=T3IDM4_CLODI
Integrase {ECO:0000313|EMBL:CDF47256.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Site-specific recombinase XerD
66_010_scaffold_287_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1435..1641)
DNA (207bp) protein (69aa)
Excisionase n=1 Tax=Clostridium difficile RepID=V5ZEM7_CLODI
Excisionase {ECO:0000313|EMBL:CDF47257.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
excisionase
66_010_scaffold_287_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1634..2866)
DNA (1233bp) protein (411aa)
Putative topoisomerase n=1 Tax=Clostridium difficile RepID=V5ZEW3_CLODI
Putative topoisomerase {ECO:0000313|EMBL:CDF47258.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
66_010_scaffold_287_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3303..3923
DNA (621bp) protein (207aa)
DNA-binding helix-turn-helix protein n=11 Tax=Firmicutes RepID=E2SHM4_9FIRM
Transcriptional regulator, PbsX family {ECO:0000313|EMBL:EGB93684.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted transcriptional regulator
66_010_scaffold_287_5
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4265..4900
DNA (636bp) protein (212aa)
Putative TetR family transcriptional regulator n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SBM9_9FIRM
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:CDC58563.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
putative TetR family transcriptional regulator
66_010_scaffold_287_6
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5007..6245
DNA (1239bp) protein (413aa)
Major facilitator superfamily transporter n=9 Tax=Firmicutes RepID=R6ST56_9FIRM
Major facilitator superfamily transporter {ECO:0000313|EMBL:CDC58561.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
macrolide-efflux protein; K08217 MFS transporter, DHA3 family, macrolide efflux protein
66_010_scaffold_287_7
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6472..6891
DNA (420bp) protein (140aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Firmicutes RepID=R2DPH9_ENTFC
Sigma-70 region 4 {ECO:0000313|EMBL:CDC58559.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
66_010_scaffold_287_8
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6896..7135
DNA (240bp) protein (80aa)
Uncharacterized protein n=13 Tax=Firmicutes RepID=E2SHM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05226.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
66_010_scaffold_287_9
unknown

Not on your lists

7375..7497
DNA (123bp) protein (41aa)

This feature has no annotations

66_010_scaffold_287_10
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7528..8532
DNA (1005bp) protein (335aa)
Aminoglycoside phosphotransferase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PU21_9CLOT
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EET87221.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
aminoglycoside phosphotransferase
66_010_scaffold_287_11
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8570..9121
DNA (552bp) protein (184aa)
Acetyltransferase (Isoleucine patch superfamily) protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCD3_9GAMM
Acetyltransferase (Isoleucine patch superfamily) protein {ECO:0000313|EMBL:EAR10199.1}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
hypothetical protein
66_010_scaffold_287_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9343..10107
DNA (765bp) protein (255aa)
Ferredoxin n=2 Tax=Clostridium botulinum B RepID=B2TPS9_CLOBB
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ACD22373.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
66_010_scaffold_287_13
unknown

Not on your lists

comp(10222..10503)
DNA (282bp) protein (94aa)

This feature has no annotations

66_010_scaffold_287_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10619..12529)
DNA (1911bp) protein (637aa)
ABC transporter, permease/ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUF1_9CLOT
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EGB94521.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
66_010_scaffold_287_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12522..14273)
DNA (1752bp) protein (584aa)
ABC transporter, permease/ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUF0_9CLOT
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EGB94520.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
multidrug ABC transporter ATPase/permease
66_010_scaffold_287_16
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14378..14890)
DNA (513bp) protein (171aa)
Transcriptional regulator n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A894_DESDJ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM00179.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
Displaying 16 items

View Taxonomy