ggKbase home page

66_011_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 357 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_011_scaffold_0_1
Veillonella sp. 6_1_27, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(744..953)
DNA (210bp) protein (70aa)
Molybdate-binding domain of ModE n=5 Tax=Veillonella RepID=T0T6E4_9FIRM
Putative molybdenum transport protein ModG {ECO:0000313|EMBL:EFG25166.2}; TaxID=450749 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 6_1_27.;"
TOBE domain-containing protein
66_011_scaffold_0_trna_6
unknown

Not on your lists

comp(1045..1115)
DNA (71bp)
transferRNA Gly
66_011_scaffold_0_2
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1254..2585
DNA (1332bp) protein (444aa)
Uncharacterized protein n=5 Tax=Veillonella RepID=T0T6F6_9FIRM
PepSY-associated TM helix superfamily {ECO:0000313|EMBL:EFG23371.2}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
PepSY-associated TM helix domain-containing protein
66_011_scaffold_0_3
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2659..3840
DNA (1182bp) protein (394aa)
UPI0003D68A49 related cluster n=1 Tax=unknown RepID=UPI0003D68A49
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
66_011_scaffold_0_4
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3876..5048
DNA (1173bp) protein (391aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXQ8_9FIRM
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
66_011_scaffold_0_5
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

5311..5919
DNA (609bp) protein (203aa)
3D domain protein n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXQ9_9FIRM
3D domain protein {ECO:0000313|EMBL:EGL77976.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
3D domain-containing protein
66_011_scaffold_0_6
Veillonella dispar, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6146..6964
DNA (819bp) protein (273aa)
Pur operon repressor PurR n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXR0_9FIRM
Pur operon repressor PurR {ECO:0000313|EMBL:ETJ02339.1}; TaxID=1403949 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella dispar DORA_11.;"
purine operon repressor, PurR; K09685 purine operon repressor
66_011_scaffold_0_7
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7096..8469
DNA (1374bp) protein (458aa)
UDP-N-acetylglucosamine pyrophosphorylase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
Bifunctional protein GlmU n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXR1_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
66_011_scaffold_0_8
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8597..9550
DNA (954bp) protein (318aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella p
Ribose-phosphate pyrophosphokinase n=5 Tax=Veillonella RepID=D1BLN4_VEIPT
66_011_scaffold_0_9
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9561..10139
DNA (579bp) protein (193aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=686660 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ATCC 17745.;"
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase n=4 Tax=Veillonella RepID=T0SZH0_9FIRM
66_011_scaffold_0_10
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

10197..11678
DNA (1482bp) protein (494aa)
Arginine decarboxylase Lysine decarboxylase Ornithine decarboxylase n=3 Tax=Veillonella RepID=T0T6F1_9FIRM
Arginine 2-monooxygenase {ECO:0000313|EMBL:EFG23379.2}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
Orn/Lys/Arg decarboxylase major region
66_011_scaffold_0_11
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11681..12367
DNA (687bp) protein (229aa)
Thymidylate kinase {ECO:0000313|EMBL:EQC66602.1}; EC=2.7.4.9 {ECO:0000313|EMBL:EQC66602.1};; TaxID=1316254 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula HSIVP1.;"
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=2 Tax=Veillonella parvula RepID=T0T6G4_9FIRM
66_011_scaffold_0_12
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12443..13483
DNA (1041bp) protein (347aa)
DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III, delta' subunit domain protein n=2 Tax=Veillonella parvula RepID=D1YMJ7_9FIRM
DNA polymerase III, delta' subunit domain protein {ECO:0000313|EMBL:EFB86616.1}; TaxID=686660 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ATCC 17745.;"
66_011_scaffold_0_13
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13484..14329
DNA (846bp) protein (282aa)
PSP1 C-terminal domain protein n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXR7_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EGL78169.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
PSP1 domain-containing protein
66_011_scaffold_0_14
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14322..15047
DNA (726bp) protein (242aa)
tRNA (Adenine37-N(6)-)-methyltransferase TrmN6 n=3 Tax=Veillonella parvula RepID=T0SZH5_9FIRM
Methyltransferase small domain protein {ECO:0000313|EMBL:EGL78201.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
methyltransferase small
66_011_scaffold_0_15
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15037..15885
DNA (849bp) protein (283aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I n=3 Tax=Veillonella parvula RepID=T0T6F4_9FIRM
66_011_scaffold_0_16
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


15920..17866
DNA (1947bp) protein (649aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXS0_9FIRM
66_011_scaffold_0_17
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17866..18636
DNA (771bp) protein (257aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-]
Hydrolase, TatD family n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXS1_9FIRM
Hydrolase, TatD family {ECO:0000313|EMBL:EGL77853.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
66_011_scaffold_0_18
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18851..20398
DNA (1548bp) protein (516aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase family protein n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXS2_9FIRM
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:EGL77730.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
66_011_scaffold_0_19
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20398..21963
DNA (1566bp) protein (522aa)
Exopolyphosphatase-like protein; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Exopolyphosphatase-like protein n=2 Tax=Veillonella parvula RepID=D1BLP5_VEIPT
Conserved domain protein {ECO:0000313|EMBL:EGL77907.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
66_011_scaffold_0_20
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21953..24070
DNA (2118bp) protein (706aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
polyphosphate kinase; K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXS4_9FIRM
66_011_scaffold_0_21
Veillonella dispar, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24496..25473
DNA (978bp) protein (326aa)
3D domain protein n=4 Tax=Veillonella RepID=D1YMK6_9FIRM
3D protein {ECO:0000313|EMBL:ETJ02354.1}; TaxID=1403949 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella dispar DORA_11.;"
3D domain-containing protein
66_011_scaffold_0_22
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25596..26534)
DNA (939bp) protein (313aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
methionine-R-sulfoxide reductase; K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
Peptide methionine sulfoxide reductase MsrA n=3 Tax=Veillonella RepID=D6KGZ4_9FIRM
66_011_scaffold_0_23
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26535..27656)
DNA (1122bp) protein (374aa)
Methionine synthase, vitamin-B12 independent {ECO:0000313|EMBL:EGL77796.1}; EC=2.1.1.14 {ECO:0000313|EMBL:EGL77796.1};; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
Methionine synthase, vitamin-B12 independent n=3 Tax=Veillonella RepID=D1YMK8_9FIRM
vitamin-B12 independent methionine synthase
66_011_scaffold_0_24
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27910..28848)
DNA (939bp) protein (313aa)
Transcriptional regulator, MarR family n=4 Tax=Veillonella RepID=D1BLQ0_VEIPT
MarR family transcriptional regulator
Transcriptional regulator CpsY {ECO:0000313|EMBL:EFG23394.2}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
66_011_scaffold_0_25
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28919..29482
DNA (564bp) protein (188aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
primase/topoisomerase-like protein; K05985 ribonuclease M5 [EC:3.1.26.8]
Ribonuclease M5 n=3 Tax=Veillonella RepID=D1BLQ1_VEIPT
66_011_scaffold_0_26
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


29496..30350
DNA (855bp) protein (285aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Veillonella RepID=D6KGZ8_9FIRM
66_011_scaffold_0_27
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(30441..31688)
DNA (1248bp) protein (416aa)
Putative sodium/glutamate symporter n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXT1_9FIRM
Putative sodium/glutamate symporter {ECO:0000313|EMBL:EGL78030.1}; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
sodium/glutamate symporter; K03312 glutamate:Na+ symporter, ESS family
66_011_scaffold_0_28
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32135..33730)
DNA (1596bp) protein (532aa)
Peptide chain release factor 3 n=3 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXT2_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
peptide chain release factor 3; K02837 peptide chain release factor 3
66_011_scaffold_0_29
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

33909..36218
DNA (2310bp) protein (770aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=768727 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula ACS-068-V-Sch12.;"
DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=Veillonella parvula ACS-068-V-Sch12 RepID=F5KXT3_9FIRM
Displaying items 1-30 of 357 in total

View Taxonomy