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66_011_scaffold_125

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_011_scaffold_125_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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54..752
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSG7_CLOB8
sporulation sigma factor SigK; K03091 RNA polymerase sporulation-specific sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
66_011_scaffold_125_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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860..1915
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGP7_9CLOT
Twitching motility protein {ECO:0000313|EMBL:EEH98219.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
twitching motility protein; K02669 twitching motility protein PilT
66_011_scaffold_125_3
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2209..3426
DNA (1218bp) protein (406aa)
Cell division protein FtsA n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCN2_9CLOT
Cell division protein FtsA {ECO:0000313|EMBL:EHI98375.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ftsA; cell division protein FtsA
66_011_scaffold_125_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3413..4561
DNA (1149bp) protein (383aa)
Cell division protein FtsZ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP87_CLOSA
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
66_011_scaffold_125_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4928..5731
DNA (804bp) protein (268aa)
spoIIGA; sigma-E processing peptidase spoiiga; K06383 stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
Sigma-E processing peptidase SpoIIGA n=2 Tax=Clostridium botulinum E RepID=B2V3X7_CLOBA
Sporulation factor SpoIIGA family protein {ECO:0000313|EMBL:AIY81768.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
66_011_scaffold_125_6
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5743..6447
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLP9_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
sporulation sigma factor SigE; K03091 RNA polymerase sporulation-specific sigma factor
66_011_scaffold_125_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6523..7302
DNA (780bp) protein (260aa)
RNA polymerase sigma-G factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H429_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
sigG; sporulation sigma factor SigG; K03091 RNA polymerase sporulation-specific sigma factor
66_011_scaffold_125_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7417..7683
DNA (267bp) protein (89aa)
Sporulation protein YlmC/YmxH n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LSH4_CLOB8
Uncharacterized protein {ECO:0000313|EMBL:KJU70540.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
sporulation protein YlmC/YmxH
66_011_scaffold_125_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7759..8211
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EJZ4_9CLOT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
66_011_scaffold_125_10
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8357..9091
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0R7_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein; K05810 conserved hypothetical protein
66_011_scaffold_125_11
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9105..9803
DNA (699bp) protein (233aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJL5_9CLOT
phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AGF55036.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
66_011_scaffold_125_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9805..11481
DNA (1677bp) protein (559aa)
two-component sensor histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
histidine kinase n=1 Tax=Clostridium botulinum RepID=UPI0002D49A8B
Sensor histidine kinase {ECO:0000313|EMBL:ACD23363.1}; Two-component sensor kinase {ECO:0000313|EMBL:CDH90114.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
66_011_scaffold_125_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11675..12544
DNA (870bp) protein (290aa)
Periplasmic phosphate-binding protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3Y5_CLOBA
phosphate-binding protein; K02040 phosphate transport system substrate-binding protein
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIL09398.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
66_011_scaffold_125_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12564..13454
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium botulinum E RepID=B2V3Y6_CLOBA
Phosphate ABC transporter permease {ECO:0000313|EMBL:KJU70534.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
pstC; phosphate ABC transporter, permease protein PstC; K02037 phosphate transport system permease protein
66_011_scaffold_125_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13454..14335
DNA (882bp) protein (294aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Clostridium botulinum E RepID=B2V3Y7_CLOBA
pstA; phosphate ABC transporter, permease protein PstA; K02038 phosphate transport system permease protein
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EES49124.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
66_011_scaffold_125_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14345..15094
DNA (750bp) protein (250aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:AIY84745.1};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate import ATP-binding protein PstB n=1 Tax=Clostridium colicanis 209318 RepID=N9WFU3_9CLOT
66_011_scaffold_125_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15110..15772
DNA (663bp) protein (221aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRR5_CLOSA
phoU; phosphate-specific transport system accessory protein PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
66_011_scaffold_125_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15889..17886
DNA (1998bp) protein (666aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAA9_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EOC99269.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
methyl-accepting chemotaxis sensory transducer with Cache sensor; K03406 methyl-accepting chemotaxis protein
66_011_scaffold_125_19
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18092..19426
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01722.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
66_011_scaffold_125_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19426..20745
DNA (1320bp) protein (440aa)
GTPase Der n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U0N2_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
engA; GTP-binding protein EngA
66_011_scaffold_125_21
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20745..21737
DNA (993bp) protein (331aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCS5_9CLOT
66_011_scaffold_125_22
unknown

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comp(21769..22293)
DNA (525bp) protein (175aa)

This feature has no annotations

66_011_scaffold_125_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22508..24016
DNA (1509bp) protein (503aa)
spoIVA; stage IV sporulation protein A (EC:3.6.1.3)
Stage IV sporulation protein A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJZ82956.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
66_011_scaffold_125_24
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24049..25074)
DNA (1026bp) protein (342aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ilvE; branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain-amino-acid aminotransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q6J0_9CLOT
66_011_scaffold_125_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25225..25626
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JJB2_CLOBU
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:KJZ84601.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
66_011_scaffold_125_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25819..26814
DNA (996bp) protein (332aa)
ansA; type II L-asparaginase; K01424 L-asparaginase [EC:3.5.1.1]
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P4_9CLOT
Asparaginase family protein {ECO:0000313|EMBL:AIY85125.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
66_011_scaffold_125_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27079..28446
DNA (1368bp) protein (456aa)
Inner membrane protein YicO n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXW5_CLOBO
inner membrane protein YicO; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease
Inner membrane protein YicO {ECO:0000313|EMBL:EES50587.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Displaying 27 items

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