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66_011_scaffold_287

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_011_scaffold_287_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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70..1437
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Clostridium colicanis 209318 RepID=N9XY13_9CLOT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
66_011_scaffold_287_2
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1453..2517
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=1 Tax=Clostridium colicanis 209318 RepID=N9XM80_9CLOT
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
disA; DNA integrity scanning protein DisA
66_011_scaffold_287_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2573..2965)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIF2_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY80831.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
66_011_scaffold_287_4
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3246..4340
DNA (1095bp) protein (365aa)
PilT protein domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYX6_9CLOT
PilT protein domain protein {ECO:0000313|EMBL:EHI97105.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PilT domain-containing protein
66_011_scaffold_287_5
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4353..5033
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F303_9CLOT
66_011_scaffold_287_6
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5356..7071
DNA (1716bp) protein (572aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QD37_9CLOT
66_011_scaffold_287_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7088..8500
DNA (1413bp) protein (471aa)
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
Cysteine--tRNA ligase n=3 Tax=Clostridium botulinum RepID=SYC_CLOBA
66_011_scaffold_287_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8553..8975
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H643_9CLOT
66_011_scaffold_287_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8989..9804
DNA (816bp) protein (272aa)
yacO; putative TrmH family tRNA/rRNA methyltransferase YacO (EC:2.1.1.-)
Putative Probable tRNA/rRNA methyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUT5_9CLOT
RNA methyltransferase {ECO:0000313|EMBL:KJU70552.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
66_011_scaffold_287_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9818..10357
DNA (540bp) protein (180aa)
Putative Tetracycline resistance protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F308_9CLOT
YacP-like NYN domain protein {ECO:0000313|EMBL:AIY84968.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tetracycline resistance protein; K06962
66_011_scaffold_287_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10402..11043
DNA (642bp) protein (214aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:KIL08524.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KIL08524.1};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
RNA polymerase sigma-H factor n=2 Tax=Clostridium botulinum E RepID=B2UY94_CLOBA
sigH; RNA polymerase factor sigma-70; K03091 RNA polymerase sporulation-specific sigma factor
66_011_scaffold_287_trna_1
unknown

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11120..11192
DNA (73bp)
transferRNA Thr
66_011_scaffold_287_12
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11255..11350
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BDP9_9RHOB
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
Displaying 13 items

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