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69_002_scaffold_36

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Displaying items 1-30 of 56 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
69_002_scaffold_36_1
Escherichia sp. KTE31, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..249
DNA (249bp) protein (83aa)
ABC transporter ATP-binding protein n=1 Tax=Escherichia coli J96 RepID=L5VDG6_ECOLX
yjjK; ABC transporter ATP-binding protein
ChvD family ATP-binding cassette protein {ECO:0000313|EMBL:EOU82639.1}; TaxID=1169349 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE31.;"
69_002_scaffold_36_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370..1602)
DNA (1233bp) protein (411aa)
nadR; nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1); K06211 HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis
Transcriptional regulator NadR n=166 Tax=Escherichia RepID=A1AJV7_ECOK1
Trifunctional NAD biosynthesis/regulator protein NadR {ECO:0000313|EMBL:EQX79493.1}; TaxID=1281210 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3190-1.;"
69_002_scaffold_36_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1623..3005)
DNA (1383bp) protein (461aa)
DNA repair protein radA n=20 Tax=Escherichia coli RepID=G0D1T8_ECOLX
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
69_002_scaffold_36_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3054..4022)
DNA (969bp) protein (323aa)
serB; phosphoserine phosphatase (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3]
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:KEJ53265.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KEJ53265.1};; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
Phosphoserine phosphatase n=27 Tax=Escherichia coli RepID=G0D1T7_ECOLX
69_002_scaffold_36_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4128..4772
DNA (645bp) protein (215aa)
Protein smp n=351 Tax=Escherichia RepID=E2QLE7_ECOLX
ytjB; Protein smp
Protein smp {ECO:0000313|EMBL:EQP97926.1}; TaxID=1281024 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 87 (4-5977630).;"
69_002_scaffold_36_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4800..5816
DNA (1017bp) protein (339aa)
Lipoate-protein ligase A {ECO:0000256|SAAS:SAAS00214764}; EC=2.7.7.63 {ECO:0000256|SAAS:SAAS00026637};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Lipoate-protein ligase A n=27 Tax=Escherichia coli RepID=G0D1T5_ECOLX
lplA; lipoate-protein ligase A
69_002_scaffold_36_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5817..7148)
DNA (1332bp) protein (444aa)
Transcriptional regulator n=32 Tax=Escherichia coli RepID=L2ZW78_ECOLX
yjjJ; hypothetical protein
HipA-like N-terminal domain protein {ECO:0000313|EMBL:KEJ53262.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
69_002_scaffold_36_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7315..8034)
DNA (720bp) protein (240aa)
deoD; purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase [EC:2.4.2.1]
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Purine nucleoside phosphorylase DeoD-type n=3 Tax=Escherichia coli RepID=A1AJV1_ECOK1
69_002_scaffold_36_9
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8091..9314)
DNA (1224bp) protein (408aa)
phosphopentomutase (EC:5.4.2.7); K01839 phosphopentomutase [EC:5.4.2.7]
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
Phosphopentomutase n=154 Tax=Escherichia RepID=DEOB_ECOK1
69_002_scaffold_36_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9366..10688)
DNA (1323bp) protein (441aa)
deoA; thymidine phosphorylase (EC:2.4.2.4)
Thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031985};; TdRPase {ECO:0000256|HAMAP-Rule:MF_01628}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
Thymidine phosphorylase n=22 Tax=Escherichia coli RepID=G0D1T1_ECOLX
69_002_scaffold_36_11
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10766..11545)
DNA (780bp) protein (260aa)
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00592};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00592}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE159.;"
Deoxyribose-phosphate aldolase n=1003 Tax=Enterobacteriaceae RepID=DEOC_ECO24
69_002_scaffold_36_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11803..13353
DNA (1551bp) protein (517aa)
YjjI family glycine radical enzyme n=39 Tax=Escherichia coli RepID=L2XJ13_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:CDN85326.1}; YjjI protein; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
yjjI; hypothetical protein
69_002_scaffold_36_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13484..14188
DNA (705bp) protein (235aa)
pflA_2; Pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
YjjW family glycine radical enzyme activase n=17 Tax=Escherichia coli RepID=L2XL87_ECOLX
Radical SAM superfamily protein {ECO:0000313|EMBL:KEJ53255.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
69_002_scaffold_36_14
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14423..15202)
DNA (780bp) protein (260aa)
deoxyribonuclease YjjV (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-]
TatD family hydrolase n=22 Tax=Escherichia RepID=L2XIX7_ECOLX
Putative deoxyribonuclease YjjV {ECO:0000313|EMBL:CDC84657.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
69_002_scaffold_36_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15199..16272)
DNA (1074bp) protein (358aa)
Phospholipase, patatin family n=242 Tax=Escherichia RepID=B1LEI1_ECOSM
putative esterase
Predicted esterase {ECO:0000313|EMBL:CAS12223.1}; TaxID=574521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O127:H6 (strain E2348/69 / EPEC).;"
69_002_scaffold_36_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16394..16555)
DNA (162bp) protein (54aa)
UPF0391 membrane protein YtjA n=1448 Tax=Enterobacteriaceae RepID=YTJA_ECO24
ytjA; hypothetical protein
UPF0391 membrane protein YtjA {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
69_002_scaffold_36_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16682..17287)
DNA (606bp) protein (202aa)
Osmotically-inducible protein Y n=9 Tax=Escherichia coli RepID=L2ZW69_ECOLX
Osmotically-inducible protein Y {ECO:0000313|EMBL:KEJ53251.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
osmY; periplasmic protein; K04065 hyperosmotically inducible periplasmic protein
69_002_scaffold_36_18
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17680..19269)
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=638 Tax=Enterobacteriaceae RepID=RF3_ECO27
prfC; peptide chain release factor 3; K02837 peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=754093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae 1617.;"
69_002_scaffold_36_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19360..20037)
DNA (678bp) protein (226aa)
yjjG; nucleotidase; K08723 5'-nucleotidase [EC:3.1.3.5]
HAD superfamily (Subfamily IA) hydrolase n=21 Tax=Escherichia RepID=F4STA6_ECOLX
HAD superfamily (Subfamily IA) hydrolase {ECO:0000313|EMBL:EGI17946.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
69_002_scaffold_36_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20052..20498)
DNA (447bp) protein (149aa)
rimI; ribosomal-protein-S18p-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:KEJ53361.1}; EC=2.3.1.128 {ECO:0000313|EMBL:KEJ53361.1};; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
Ribosomal-protein-S18p-alanine acetyltransferase n=52 Tax=Escherichia RepID=G0D1S0_ECOLX
69_002_scaffold_36_21
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20467..20880)
DNA (414bp) protein (138aa)
DNA polymerase III subunit psi n=38 Tax=Escherichia RepID=G0D1R9_ECOLX
DNA polymerase III subunit psi
DNA polymerase III subunit psi {ECO:0000256|PIRNR:PIRNR029225}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
69_002_scaffold_36_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20983..22014
DNA (1032bp) protein (344aa)
rsmC; 16S rRNA methyltransferase C (EC:2.1.1.171); K00564 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
Ribosomal RNA small subunit methyltransferase C {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048249}; EC=2.1.1.172 {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048248};; 16S rRNA m2G1207 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01862}; rRNA (guanine-N(2)-)-methyltransferase RsmC {ECO:0000256|HAMAP-Rule:MF_01862}; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
Ribosomal RNA small subunit methyltransferase C n=33 Tax=Escherichia coli RepID=G0D1R8_ECOLX
69_002_scaffold_36_trna_1
unknown

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22214..22297
DNA (84bp)
transferRNA Leu
69_002_scaffold_36_trna_2
unknown

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22329..22412
DNA (84bp)
transferRNA Leu
69_002_scaffold_36_trna_3
unknown

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22450..22533
DNA (84bp)
transferRNA Leu
69_002_scaffold_36_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22575..22811)
DNA (237bp) protein (79aa)
Uncharacterized protein n=27 Tax=Escherichia coli RepID=U9ZVP2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ53358.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
69_002_scaffold_36_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22952..23740
DNA (789bp) protein (263aa)
Ferric iron reductase fhuF n=10 Tax=Escherichia coli RepID=L2ZVV8_ECOLX
Ferric iron reductase protein FhuF {ECO:0000313|EMBL:EGI17941.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
fhuF; ferric hydroximate transport ferric iron reductase; K13255 ferric iron reductase protein FhuF
69_002_scaffold_36_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23778..24455)
DNA (678bp) protein (226aa)
BglJ 2-component transcriptional regulator n=90 Tax=Escherichia RepID=A1AJN9_ECOK1
LuxR family transcriptional regulator
Transcriptional activator BglJ {ECO:0000313|EMBL:EOV58248.1}; TaxID=1182676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE69.;"
69_002_scaffold_36_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24413..25138)
DNA (726bp) protein (242aa)
Transcriptional regulator n=25 Tax=Escherichia RepID=L2XLL9_ECOLX
Putative regulator {ECO:0000313|EMBL:EGI17939.1}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
yjjQ; hypothetical protein
69_002_scaffold_36_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25758..26528
DNA (771bp) protein (257aa)
Inner membrane protein yjjP n=235 Tax=Escherichia RepID=E2QLC5_ECOLX
yjjP; Inner membrane protein yjjP
Uncharacterized protein {ECO:0000313|EMBL:CAV18192.1}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
Displaying items 1-30 of 56 in total

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