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71_003_scaffold_58

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Displaying items 1-30 of 89 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_58_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(309..1673)
DNA (1365bp) protein (455aa)
Bacterial regulatory protein, GntR family n=8 Tax=Staphylococcus epidermidis RepID=H0DVZ1_STAEP
GntR family transcriptional regulator {ECO:0000313|EMBL:ESV18609.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
71_003_scaffold_58_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1770..2657
DNA (888bp) protein (296aa)
pyridoxal biosynthesis lyase PdxS; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-]
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Pyridoxal biosynthesis lyase PdxS n=63 Tax=Staphylococcus epidermidis RepID=PDXS_STAEQ
71_003_scaffold_58_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2657..3217
DNA (561bp) protein (187aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-]
Glutamine amidotransferase subunit PdxT n=8 Tax=Staphylococcus epidermidis RepID=H0DVZ3_STAEP
71_003_scaffold_58_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3793..5007)
DNA (1215bp) protein (405aa)
Pyrimidine nucleoside transport protein n=9 Tax=Staphylococcus epidermidis RepID=E6JR47_STAEP
Pyrimidine nucleoside transporter NupC {ECO:0000313|EMBL:ESV19957.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
nupC; nucleoside permease NupC; K11535 nucleoside transport protein
71_003_scaffold_58_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5164..5625
DNA (462bp) protein (154aa)
Transcriptional regulator CtsR n=77 Tax=Staphylococcus epidermidis RepID=CTSR_STAEQ
ctsR; CtsR family transcriptional regulator; K03708 transcriptional regulator CtsR
Transcriptional repressor of CtsR {ECO:0000313|EMBL:EES36943.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
71_003_scaffold_58_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5646..6209
DNA (564bp) protein (188aa)
Uncharacterized protein n=5 Tax=Staphylococcus epidermidis RepID=H3V697_STAEP
Excinuclease ABC subunit B {ECO:0000313|EMBL:ESV19955.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein
71_003_scaffold_58_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6199..7206
DNA (1008bp) protein (336aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
ATP:guanido phosphotransferase; K00936 [EC:2.7.3.-]
Putative ATP:guanido phosphotransferase HMPREF9956_0196 n=5 Tax=Staphylococcus epidermidis RepID=H0DVZ7_STAEP
71_003_scaffold_58_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7220..9673
DNA (2454bp) protein (818aa)
Negative regulator of genetic competence clpC/mecB n=22 Tax=Staphylococcus epidermidis RepID=E6JR43_STAEP
ATP-dependent Clp protease ATP-binding protein {ECO:0000313|EMBL:ESV18710.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
endopeptidase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
71_003_scaffold_58_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10378..11751
DNA (1374bp) protein (458aa)
DNA repair protein radA n=18 Tax=Staphylococcus epidermidis RepID=E6JR42_STAEP
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
71_003_scaffold_58_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11787..12863
DNA (1077bp) protein (359aa)
PIN domain protein n=11 Tax=Staphylococcus RepID=Q5HRM6_STAEQ
twitching motility protein PilT
PIN domain protein {ECO:0000313|EMBL:EFE58339.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
71_003_scaffold_58_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13273..14727
DNA (1455bp) protein (485aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
gltX; glutamyl-tRNA synthetase; K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
Glutamate--tRNA ligase n=23 Tax=Staphylococcus epidermidis RepID=E6JR40_STAEP
71_003_scaffold_58_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15136..15765
DNA (630bp) protein (210aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
cysE; serine acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=17 Tax=Staphylococcus epidermidis RepID=E6JR39_STAEP
71_003_scaffold_58_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15749..17149
DNA (1401bp) protein (467aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=18 Tax=Staphylococcus epidermidis RepID=H3V690_STAEP
71_003_scaffold_58_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17154..17540
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein; K11145 ribonuclease III family protein [EC:3.1.26.-]
Mini-ribonuclease 3 n=2 Tax=Staphylococcus epidermidis RepID=H0DW21_STAEP
71_003_scaffold_58_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17530..18297
DNA (768bp) protein (256aa)
tRNA/rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase, TrmH family, group 3 n=16 Tax=Staphylococcus epidermidis RepID=H0DW22_STAEP
RNA methyltransferase {ECO:0000313|EMBL:ESV18623.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
71_003_scaffold_58_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18294..18821
DNA (528bp) protein (176aa)
Uncharacterized protein n=81 Tax=Staphylococcus epidermidis RepID=Q5HRM0_STAEQ
hypothetical protein; K06962
Uncharacterized protein {ECO:0000313|EMBL:AAW53564.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_003_scaffold_58_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18891..19466
DNA (576bp) protein (192aa)
RNA polymerase sigma factor, sigma-70 family protein n=15 Tax=Staphylococcus epidermidis RepID=E6JR34_STAEP
RNA polymerase sigma factor sigW {ECO:0000313|EMBL:ESV18625.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
RNA polymerase sigma factor sigW; K03091 RNA polymerase sporulation-specific sigma factor
71_003_scaffold_58_18

Not on your lists

19793..19978
DNA (186bp) protein (62aa)
Protein translocase subunit SecE n=79 Tax=Staphylococcus epidermidis RepID=SECE_STAEQ
Preprotein translocase subunit SecE {ECO:0000313|EMBL:ETJ20435.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
71_003_scaffold_58_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19989..20537
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=23 Tax=Staphylococcus epidermidis RepID=E6JR31_STAEP
nusG; transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
71_003_scaffold_58_20
Staphylococcus haemolyticus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


20868..21290
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=71 Tax=Staphylococcus RepID=RL11_STAEQ
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=279808 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus haemolyticus (strain JCSC1435).;"
71_003_scaffold_58_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


21504..22199
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=79 Tax=Staphylococcus epidermidis RepID=RL1_STAEQ
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_003_scaffold_58_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


22474..22974
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=79 Tax=Staphylococcus RepID=RL10_STAEQ
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_003_scaffold_58_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


23012..23380
DNA (369bp) protein (123aa)
50S ribosomal protein L7/L12 n=4 Tax=Staphylococcus epidermidis RepID=H3WS17_STAEP
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
71_003_scaffold_58_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23452..24180
DNA (729bp) protein (243aa)
Ribosomal protein L11 methyltransferase-like protein n=10 Tax=Staphylococcus epidermidis RepID=H0DW32_STAEP
Methyltransferase {ECO:0000313|EMBL:ESV19936.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein
71_003_scaffold_58_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24396..27947
DNA (3552bp) protein (1184aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
DNA-directed RNA polymerase subunit beta n=94 Tax=Staphylococcus RepID=RPOB_STAEQ
71_003_scaffold_58_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28079..31702
DNA (3624bp) protein (1208aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=2 Tax=Staphylococcus epidermidis RepID=J0FCM3_STAEP
71_003_scaffold_58_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32030..32290
DNA (261bp) protein (87aa)
Ribosomal protein L7Ae n=19 Tax=Staphylococcus epidermidis RepID=H0DW35_STAEP
50S ribosomal protein L7 {ECO:0000313|EMBL:ESV19933.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
ribosomal protein L7Ae-like
71_003_scaffold_58_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


32381..32794
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=71 Tax=Staphylococcus epidermidis RepID=RS12_STAEQ
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
71_003_scaffold_58_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


32865..33335
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=513 Tax=Staphylococcus RepID=RS7_STAA1
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
71_003_scaffold_58_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33455..35536
DNA (2082bp) protein (694aa)
Elongation factor G n=78 Tax=Staphylococcus RepID=EFG_STAEQ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
fusA; elongation factor G; K02355 elongation factor G
Displaying items 1-30 of 89 in total

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