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71_003_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 116 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_17_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..241
DNA (240bp) protein (80aa)
ABC transporter permease n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8ASV4_BIFLN
ABC transporter permease {ECO:0000313|EMBL:KFI89947.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
MalF-type ABC sugar transport systems permease component
71_003_scaffold_17_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

238..1242
DNA (1005bp) protein (335aa)
ABC transporter permease n=2 Tax=Bifidobacterium longum RepID=F8ASV3_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30092.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein
71_003_scaffold_17_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2059..3837
DNA (1779bp) protein (593aa)
bgaB; beta-galactosidase I; K12308 beta-galactosidase [EC:3.2.1.23]
Beta-galactosidase n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7K5_BIFLO
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32207.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_17_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4060..5115
DNA (1056bp) protein (352aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GTD1_BIFLN
Bacterial regulatory protein, LacI family {ECO:0000313|EMBL:KFI89945.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
transcriptional regulator
71_003_scaffold_17_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5452..6336
DNA (885bp) protein (295aa)
Aldo/keto diketogulonate reductase n=7 Tax=Bifidobacterium RepID=E3EPQ7_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32205.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Aldo/keto diketogulonate reductase
71_003_scaffold_17_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6371..7180
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A395_BIFAA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32204.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_003_scaffold_17_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7379..8707
DNA (1329bp) protein (443aa)
Manganese transport protein MntH n=1 Tax=Bifidobacterium longum E18 RepID=V6XUW6_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32203.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
mntH; H(+)-stimulated manganese uptake system protein; K03322 manganese transport protein
71_003_scaffold_17_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9709..11394)
DNA (1686bp) protein (562aa)
Permease n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GKK7_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32202.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_003_scaffold_17_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11732..13270)
DNA (1539bp) protein (513aa)
Galactosyl transferase CpsD n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=E8MMJ1_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32201.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
galactosyl transferase CpsD
71_003_scaffold_17_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13686..14291
DNA (606bp) protein (202aa)
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:KFI89939.1}; EC=3.1.3.48 {ECO:0000313|EMBL:KFI89939.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase n=2 Tax=Bifidobacterium longum RepID=D6D9V7_BIFLN
71_003_scaffold_17_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14815..15669
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AST7_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI98089.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
71_003_scaffold_17_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15666..16811
DNA (1146bp) protein (382aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R054_BIFLM
protein
Polysaccharide pyruvyl transferase {ECO:0000313|EMBL:CCK34401.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
71_003_scaffold_17_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16840..17868
DNA (1029bp) protein (343aa)
Nitroreductase family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2HZM0_BIFLN
Nitroreductase family protein {ECO:0000313|EMBL:CCK34402.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hypothetical protein
71_003_scaffold_17_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17883..19013
DNA (1131bp) protein (377aa)
Glycosyl transferases group 1 family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I085_BIFLN
Glycosyl transferases group 1 family protein {ECO:0000313|EMBL:CCK34403.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
glycosyl transferase, group 1
71_003_scaffold_17_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19034..20194
DNA (1161bp) protein (387aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MRY1_BIFL1
Putative polysaccharide polymerase {ECO:0000313|EMBL:KFI72077.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
71_003_scaffold_17_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20199..21191
DNA (993bp) protein (331aa)
glycosyl transferase n=1 Tax=Clostridium beijerinckii RepID=UPI000319679E
Glycosyl transferase {ECO:0000313|EMBL:KFI72076.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Glycosyltransferase
71_003_scaffold_17_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21201..22616
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Metascardovia criceti RepID=UPI000364042C
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KFI72075.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
71_003_scaffold_17_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22754..23611
DNA (858bp) protein (286aa)
Capsular polysaccharide synthesis n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUM1_BIFLS
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:KFI72074.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
capsular polysaccharide biosynthesis protein
71_003_scaffold_17_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24139..25011)
DNA (873bp) protein (291aa)
Transposase n=5 Tax=Bifidobacterium longum RepID=F8AUI8_BIFLN
transposase
Transposase {ECO:0000313|EMBL:ACD99267.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
71_003_scaffold_17_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26116..27279
DNA (1164bp) protein (388aa)
Transposase (Fragment) n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GTX1_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31944.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transposase
71_003_scaffold_17_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27248..27685
DNA (438bp) protein (146aa)
Transposase n=11 Tax=Bifidobacterium longum RepID=B3DTH4_BIFLD
transposase
Transposase {ECO:0000313|EMBL:ACD98443.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
71_003_scaffold_17_22
unknown

Not on your lists

comp(28413..28553)
DNA (141bp) protein (47aa)

This feature has no annotations

71_003_scaffold_17_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28636..30024)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUK1_BIFLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ53147.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
71_003_scaffold_17_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30205..31227
DNA (1023bp) protein (341aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R275_BIFLM
71_003_scaffold_17_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31490..32908
DNA (1419bp) protein (473aa)
Chain length regulator (Capsular polysaccharide biosynthesis) / Tyrosine-protein kinase (Capsular polysaccharide biosynthesis) n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1Z6_BIFBU
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32185.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase (capsular polysaccharide biosynthesis)
71_003_scaffold_17_26
unknown

Not on your lists

comp(33020..33118)
DNA (99bp) protein (33aa)

This feature has no annotations

71_003_scaffold_17_27
Brochothrix campestris, Brochothrix, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33733..34518
DNA (786bp) protein (262aa)
amino acid ABC transporter binding protein yxeM precursor n=1 Tax=Kurthia sp. JC8E RepID=UPI000288120C
Amino acid ABC transporter amino acid-binding protein/permease, his/glu/gln/arg/opine family {ECO:0000313|EMBL:EUJ40661.1}; TaxID=1265861 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Brochothrix.;" source="Brochothrix campestris FSL F6-1037.;"
amino acid ABC transporter amino acid-binding protein/permease, his/glu/gln/arg/opine family
71_003_scaffold_17_28
Brochothrix campestris, Brochothrix, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34980..35231
DNA (252bp) protein (84aa)
amino acid ABC transporter permease n=1 Tax=Kurthia sp. JC8E RepID=UPI0002895AEE
Amino acid ABC transporter permease {ECO:0000313|EMBL:EUJ40659.1}; TaxID=1265861 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Brochothrix.;" source="Brochothrix campestris FSL F6-1037.;"
L-cystine transport system permease TcyL; K02029 polar amino acid transport system permease protein
71_003_scaffold_17_29
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35228..35950
DNA (723bp) protein (241aa)
ABC transporter, ATP-binding protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDA4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM64421.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
amino-acid ABC transporter ATP-binding protein
71_003_scaffold_17_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38277..39158
DNA (882bp) protein (294aa)
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32179.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Displaying items 1-30 of 116 in total

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