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71_003_scaffold_8

Search features with annotation key words

Displaying items 61-90 of 256 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_8_61
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

75390..76385
DNA (996bp) protein (332aa)
universal stress protein n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976513
uspA; universal stress protein
Universal stress protein family {ECO:0000313|EMBL:KFI42725.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_8_62
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(76536..77609)
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0Y3_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42724.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_8_63
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77628..78017)
DNA (390bp) protein (130aa)
Cold shock protein n=7 Tax=Bifidobacterium RepID=E3EPW1_BIFBS
cspB; cold shock protein CspB; K03704 cold shock protein (beta-ribbon, CspA family)
Putative cold shock protein {ECO:0000313|EMBL:EKE50856.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_8_64
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78134..80083)
DNA (1950bp) protein (650aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
two-component system histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
Two-component system histidine kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNE5_9BIFI
71_003_scaffold_8_65
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80094..80831)
DNA (738bp) protein (246aa)
Two-component response regulator {ECO:0000313|EMBL:KFI42721.1}; EC=2.7.7.65 {ECO:0000313|EMBL:KFI42721.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Two-component response regulator n=6 Tax=Bifidobacterium bifidum RepID=E3EPV9_BIFBS
response regulator of two-component system
71_003_scaffold_8_66
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80815..81945)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MDP3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15442.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
71_003_scaffold_8_67
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

82033..82326
DNA (294bp) protein (98aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WH66_BIFBI
hypothetical protein
ESAT-6-like protein {ECO:0000256|RuleBase:RU362001}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_68
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(82487..84112)
DNA (1626bp) protein (542aa)
60 kDa chaperonin n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HA34_BIFBI
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
groEL; molecular chaperone GroEL; K04077 chaperonin GroEL
71_003_scaffold_8_69
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84412..84681)
DNA (270bp) protein (90aa)
Cold shock protein n=7 Tax=Bifidobacterium RepID=E3EPV5_BIFBS
cspA; Cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold shock protein {ECO:0000313|EMBL:ADO52877.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_8_70
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84771..85517)
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V8S6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50863.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
71_003_scaffold_8_71
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

85598..86389
DNA (792bp) protein (264aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CF09_BIFBI
71_003_scaffold_8_72
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

86427..87506
DNA (1080bp) protein (360aa)
ATPase family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BY22_BIFBI
MoxR protein {ECO:0000313|EMBL:KFI42714.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
moxR; methanol dehydrogenase regulator
71_003_scaffold_8_73
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87503..88501
DNA (999bp) protein (333aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WH60_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83118.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_74
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

88498..89070
DNA (573bp) protein (191aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2HWM6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83117.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_8_75
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89070..90143
DNA (1074bp) protein (358aa)
von Willebrand factor type A domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DTM2_BIFBI
Membrane spanning protein {ECO:0000313|EMBL:KFI42711.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
71_003_scaffold_8_76
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

90140..91168
DNA (1029bp) protein (343aa)
von Willebrand factor, type A n=7 Tax=Bifidobacterium RepID=I3WH57_BIFBI
von Willebrand factor, type A
Membrane spanning protein with a von Willebrand factor type A domain {ECO:0000313|EMBL:KFI42710.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_8_77
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

91165..91785
DNA (621bp) protein (207aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=R6GBD2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22758.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_8_78
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

92378..92692
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H937_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22757.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_8_79
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

92689..94224
DNA (1536bp) protein (512aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNC7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22756.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_8_80
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

94384..95820
DNA (1437bp) protein (479aa)
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
PurB Adenylosuccinate lyase {ECO:0000313|EMBL:KFI42706.1}; EC=4.3.2.2 {ECO:0000313|EMBL:KFI42706.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
PurB Adenylosuccinate lyase n=4 Tax=Bifidobacterium bifidum RepID=E4P0W5_BIFBP
71_003_scaffold_8_81
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

95873..98377
DNA (2505bp) protein (835aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I7I6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50874.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
71_003_scaffold_8_82
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

98508..98789
DNA (282bp) protein (94aa)
DNA-binding protein HU n=8 Tax=Bifidobacterium RepID=E3ENY9_BIFBS
hup; DNA-binding protein
DNA-binding protein HB1 {ECO:0000313|EMBL:EFR50006.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_003_scaffold_8_83
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(98953..100413)
DNA (1461bp) protein (487aa)
Proteasome accessory factor PafA n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTL0_BIFBI
Proteasome accessory factor PafA {ECO:0000313|EMBL:ERI83106.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97833.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_8_84
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(100410..100613)
DNA (204bp) protein (68aa)
Ubiquitin-like protein Pup n=3 Tax=Bifidobacterium bifidum RepID=E4V8R2_BIFBI
hypothetical protein; K13570 prokaryotic ubiquitin-like protein Pup
Ubiquitin-like protein Pup {ECO:0000313|EMBL:ERI83105.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97832.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_85
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(100767..101585)
DNA (819bp) protein (273aa)
suhB; inositol-1-monophosphatase (EC:3.1.3.25)
Inositol monophosphatase family protein {ECO:0000313|EMBL:KFI42701.1}; EC=3.1.3.25 {ECO:0000313|EMBL:KFI42701.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Inositol monophosphatase family protein n=5 Tax=Bifidobacterium bifidum RepID=E4P0W0_BIFBP
71_003_scaffold_8_86
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(101747..103387)
DNA (1641bp) protein (547aa)
Pup-ligase protein domain; K13571 proteasome accessory factor A [EC:6.3.2.-]
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GM57_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22749.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_87
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(103384..105075)
DNA (1692bp) protein (564aa)
ATPase AAA (EC:3.6.1.3); K13527 proteasome-associated ATPase
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DNF8_BIFBI
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_88
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

105296..106051
DNA (756bp) protein (252aa)
serB; phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase {ECO:0000313|EMBL:AFL04207.1}; EC=3.1.3.3 {ECO:0000313|EMBL:AFL04207.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Phosphoserine phosphatase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH44_BIFBI
71_003_scaffold_8_89
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(106241..107215)
DNA (975bp) protein (325aa)
fmt; methionyl-tRNA formyl transferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Methionyl-tRNA formyltransferase n=3 Tax=Bifidobacterium bifidum RepID=I3WH43_BIFBI
71_003_scaffold_8_90
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(107306..108010)
DNA (705bp) protein (235aa)
putative alpha beta hydrolase (EC:3.8.1.2)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=9 Tax=Bifidobacterium RepID=E3ENY1_BIFBS
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ADO52856.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 61-90 of 256 in total

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