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71_003_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 256 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_8_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..375)
DNA (375bp) protein (125aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Enolase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GD95_9BIFI
71_003_scaffold_8_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(573..1385)
DNA (813bp) protein (271aa)
pabC; aminodeoxychorismate lyase (EC:4.1.3.38)
Branched-chain amino acid aminotransferase n=8 Tax=Bifidobacterium RepID=E3EQQ4_BIFBS
Aminotransferase, class IV {ECO:0000313|EMBL:ERI83197.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1354..2871)
DNA (1518bp) protein (506aa)
para-aminobenzoate synthase subunit I (EC:2.6.1.85); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
Putative para-aminobenzoate synthase, subunit I n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P130_BIFBP
Uncharacterized protein {ECO:0000313|EMBL:BAQ97911.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2868..6479)
DNA (3612bp) protein (1204aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=2 Tax=Bifidobacterium bifidum RepID=K2IN04_BIFBI
71_003_scaffold_8_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6469..7068)
DNA (600bp) protein (200aa)
pth; peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Peptidyl-tRNA hydrolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQ21_BIFBS
71_003_scaffold_8_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7072..7626)
DNA (555bp) protein (185aa)
phosphinothricin N-acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Toxin-antitoxin system, toxin component, GNAT family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGP7_BIFBI
N-acetyltransferase {ECO:0000313|EMBL:BAQ97908.1}; Toxin-antitoxin system, toxin component, GNAT family {ECO:0000313|EMBL:ERI83193.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7835..8626)
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein (EC:3.6.3.40); K09691 lipopolysaccharide transport system ATP-binding protein
Teichoic acid transport system, ATP-binding protein n=7 Tax=Bifidobacterium RepID=E3EQ19_BIFBS
ATP-binding protein ABC transporter system for polysaccharides {ECO:0000313|EMBL:CDB23058.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8616..9422)
DNA (807bp) protein (269aa)
Teichoic acid translocation permease protein n=4 Tax=Bifidobacterium RepID=I3WHC8_BIFBI
tagG; teichoic acid translocation permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_8_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9476..10519)
DNA (1044bp) protein (348aa)
NAD-dependent epimerase/dehydratase family protein (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase family protein n=5 Tax=Bifidobacterium bifidum RepID=E4P124_BIFBP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:ERI83189.1}; Putative dehydratase {ECO:0000313|EMBL:BAQ97905.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10546..11262)
DNA (717bp) protein (239aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ispD; 2-C-methyl-D-erythritol 4-phosphatecytidylyl transferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M6N2_BIFBI
71_003_scaffold_8_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11404..12804)
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCA6_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52937.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_8_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13004..13771)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GJW0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB24750.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13904..15091)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P121_BIFBP
hypothetical protein
Acyltransferase {ECO:0000313|EMBL:EFR50083.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_003_scaffold_8_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15094..16980)
DNA (1887bp) protein (629aa)
Glycosyl/glycerophosphate transferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ13_BIFBS
Glycosyl/glycerophosphate transferase {ECO:0000313|EMBL:EKF15612.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
glycosyl/glycerophosphate transferase
71_003_scaffold_8_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17102..18223
DNA (1122bp) protein (374aa)
glycosyl transferase, group 2 family protein (EC:2.7.8.14)
Glycosyl transferase, group 2 family protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P119_BIFBP
Putative ribitolphospho transferase {ECO:0000313|EMBL:AFL04284.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_8_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18731..21994)
DNA (3264bp) protein (1088aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WHC0_BIFBI
UPF0182 protein BBBF_0691 {ECO:0000256|HAMAP-Rule:MF_01600}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_8_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22177..23397
DNA (1221bp) protein (407aa)
nagZ; beta-hexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Beta-hexosaminidase n=2 Tax=Bifidobacterium bifidum RepID=I3WHB9_BIFBI
71_003_scaffold_8_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23412..24494)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0T2_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52931.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_8_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24491..25312)
DNA (822bp) protein (274aa)
ABC transporter ATP-binding protein (EC:3.6.3.30)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCK6_9BIFI
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB22070.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25309..26409)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2I5R1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52929.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_8_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26926..28293)
DNA (1368bp) protein (456aa)
Acetylornithinedeacetylase/Succinyl-diaminopimelate desuccinylase n=3 Tax=Bifidobacterium RepID=I3WHB5_BIFBI
argE; acetylornithinedeacetylase/Succinyl-diaminopimelate desuccinylase
Acetylornithinedeacetylase/Succinyl-diaminopimela te desuccinylase {ECO:0000313|EMBL:CDB22073.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_8_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28436..29038
DNA (603bp) protein (201aa)
Conserved hypothetical membrane spanning protein n=2 Tax=Bifidobacterium bifidum RepID=E3EQ05_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52927.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_8_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29291..30781
DNA (1491bp) protein (497aa)
pdhD; dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoamide dehydrogenase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MWV9_BIFBI
Dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:EKF16478.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_8_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30887..31684
DNA (798bp) protein (266aa)
Integral membrane protein n=5 Tax=Bifidobacterium RepID=I3WHB2_BIFBI
integral membrane protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42757.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_8_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32000..33448
DNA (1449bp) protein (483aa)
glnA; glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Glutamine synthetase n=8 Tax=Bifidobacterium RepID=E3EQ02_BIFBS
71_003_scaffold_8_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33584..33811)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTT5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83171.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_8_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33955..34095
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CF60_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83170.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34156..34584
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BY78_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42753.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Hypothetical protein
71_003_scaffold_8_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34673..35629
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGM2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83168.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_8_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35732..35881)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DNN1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83167.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 256 in total

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