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71_003_scaffold_8_4

Organism: 71_003_Bifidobacterium_bifidum_63_176

near complete RP 52 / 55 MC: 7 BSCG 51 / 51 MC: 2 ASCG 13 / 38
Location: comp(2868..6479)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2366
  • Evalue 0.0
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 99.5
  • Coverage: 999.99
  • Bit_score: 2359
  • Evalue 0.0
Transcription-repair-coupling factor n=2 Tax=Bifidobacterium bifidum RepID=K2IN04_BIFBI similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2366
  • Evalue 0.0

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Taxonomy

Bifidobacterium bifidum → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3612
ATGGCCGCTGAGCAGGGACGCGCGCGCGGCAAAGCGTCCGCCGCCACCGCCGCTGCCACGGCCACACGCGTCCAGAACGCGCTGATCGACGGCTCCCTGTGCGGCATCCTCGAACGGCTCGATGAGGATCCGGCATTTCATCGGCTCGTCAGCGGCGGCATGAGCATCGCCGACGGCAAGGACATCGCCCCGATCATCACCGTGGGCGCCCCGGACGGGTTGCGCCCGGCCATCGCCGCAGCGCAGGCGGAACACACCCCCGTCGTCCTGGTCGTGGCCTCCAGCCGCGAGGCCGAGGACACCGTGAACGCGCTGCGGTCGTGGTACGACGGCGACCCGAACGACATCGCACAACTGGAGGCATGGGAGACGCTGCCCCACGAGCGGCTCAGTCCCCGTGCCGACACCGTGGCGAGCCGCATGGCCGTATTCCGCAGGCTCACGCACCCCAGCGACACCAATCCGATGTTCGGACCGATCCGCATACTCGTCATGCCGGTGCGTTCGCTGATCCAGCCCGTCGTCAAGGGGCTCGGCGACGTCGATCCGCTTGTCTTCACGCAAGGCGAGGAGCTGCCTCTCGACGACGTGTCGCGCCGACTGGTTGAGAACGCCTACACGCGCGTCGACCTGGTGATGGACCGTGGCGAGTTCGCGGTGCGCGGCGGCATCATCGACGTCTTTCCCCCAACCGCGCCACATCCGGTGCGCATCGAGTTCTTCGGTGACGAGATCGACTCCATCCGAGAATTCCACGCGTCCGACCAGCGCACCTACGGCGAGGGCGTCCGTACGATCTGGGCGACGCCCTGCCGTGAACTGCAGCTCACCGACGCCGTGCGGGACCGGGCGAAACGGCTCATCGGGCAGATTCCGAATGCCGACGACATGCTGGAGTCCATCGCGAACGCGATTCCCATCGAAGGCATGGAATCCCTGATGCCCGCGCTCATCGACGACATGGAACCCGTGACCGGCATGCTCGACAGGCATGCCGTCATCATGCTCGCCGACTCGGAAAAGCTGCGCCGCGCGGCGGACGACCTCTCGAAAACCGCGAACGAGTTCCTCGCCGCCAGCTGGCATGTCGCCGCGGCCGGGCACGGTGCCGGAGCTCCCATCAGCTTCGACCAGGCCAGCTTCCTCGACTACGAGGAGACCATCAACTCGCTCGCATACTCCAGCCACGACGTGTGGAACCTCACCAGTTTCGGCGTGGACGCCAGCCGCCCGAACCACGTGCAGCTCGCCGCCGGCAACCCGGGCGAATACCGCGGTGACGAGACGAAGGCCGCGGCCGGCATCGAGGGGCTCATCGACGCGGGGTACCAGGTCACCGTCACCGCGGCCGCGCAGGGCACGCTCGCACGATTGAAGCGAGCCATCAACGAGACCGGCATCGCCTCGTTCGATGTCATCCGCTCCCAGGCCATCGACGGGTTCATCGACACGGCGGCGAAGACCGCGCTGCTCACCGAACGCGACCTGACCGGACGGTCCAGTGCGGCCGGTCAGGCGAAGACCCCCAAGCGCCGCCGCAAGGCAATCGACCTGATGGAGCTCAAAGCCGGAGACTACGTGGTCCATGAGCAGCACGGCATCGGCCGTTTCCTGGAGATGCGGCAGCGCACCATCGGCACCGGGGCGAACAAGACCACGCGCGAATACCTTGTCATCGAATACGCGCCCAGCAAGCGCGGCGCCCCGGCCGACAAGCTGTTCATCCCCACCGATCAGCTGGATCTGATCAGCAAATACATCGGCGCGGAGGCCCCCAAGCTCAACAAGCTCGGCGGCTCCGACTGGGCCGCAACCAAGGCGAAGGCGCGCAAGCACGTGCACGAGATCGCCGAGGACCTGGTGAAGCTGTACTCTGCCAGGCAGCGCACCAAGGGGTTCGCGTTCAGCCCCGACACGCCATGGCAGAAGGAGCTGGAGGACGCGTTCCCGTATCAGGAGACGACGGACCAGCTCACCACCATCGACGATGTCAAGTCCGACATGGAGAAACCAGTGCCGATGGATCGCCTCATCTGCGGCGACGTCGGCTTCGGCAAGACCGAGATCGCCGTGAGAGCAGCGTTCAAGGCCATACAGGACGGCAAGCAGGTGGCCGTCCTCGTGCCGACCACGCTGCTCGTGCAGCAGCATCACGAGACGTTCACCGAACGGTACGAGGGCTTCCCGGTCACCGTCGCGGCCATGAGCCGCTTCCAGACGACCAAGGAGATCAACGAGACCATCGAGGGACTGGAGACGGGTGGCGTCGACGTCGTCATCGGCACCCACAAGCTGCTCAACCCCAAGATCAAGTTCAAGGATCTCGGCCTTGTCATCATCGACGAGGAGCAGCGGTTCGGCGTCGAGCACAAGGAGACGCTCAAGGCGCTGCGCACCAATGTGGACGTGCTCTCGCTGTCCGCCACGCCTATCCCGCGCACGCTGGAGATGGCGGTGACCGGCATCCGCGAGATGTCTACGCTCGCCACCCCGCCCGAGGACCGGCTTCCCGTGCTCACCTACGTGGGCGCGTACGAGGACGCTCAGGTCACGGCCGCGGTCCGGCGCGAACTGCTGCGCGGCGGACAGGTGTTCTACGTGCACAACCGCGTGCAGGACATCGCGAAGACGGCCGCGAAGATCCACGAGCTCGTCCCCGAGGCGCGAGTCGGCATCGCTCACGGCAAGATGGGGGAGAAGCAGCTCGACGGCGTAATCCGCGACTTCTGGCATCGCGACATCGACGTGCTCGTATGCACGACGATCATCGAGACCGGACTCGACATCTCCAACGCGAACACGCTGATCGTAGACCACGCCGACCGGTTCGGCCTCTCCCAGCTGCACCAGCTGCGCGGGCGCGTCGGCCGTGGCCGCGAACGCGCGTACGCCTACTTCCTGTACGACCCGTCCAAGCCGATGACCCAGCAGTCGCACGACCGCCTCGCCACCATCGCGCAGAACACGGCGCTCGGAAGCGGCTTCGACGTCGCCATGAAGGACCTCGAACTGCGCGGCACCGGCAACCTGCTGGGCGACGAACAGTCCGGGCACATCGAGGGCGTCGGCTTCGACCTGTACGTGCGCATGGTCTCGGAAGCCGTCGAACAGTACAAGGAGCCGGAGCGGACCGAGCCGGTCGCGGTCACCATCGACCTGCCCATCGAAGCGTCCATCCCGGTGGACTACATCGATTCCGACAAGCTGCGGCTCGAAGCATACCGAAAACTGGCCGCTTCGCGCACCGATGAGGACCTCAAGGAACTCGCCGACGAACTCACGGATCGCTACGGCAAACTGCCGGAGGAGTTCGAGACGCTGTTCGGCGTGGCCCGCCTGCGCATGAAGGCGCGGGAACTCGGCATATCGGAGATCGTCGCGCAGGGCAAGAACGTGCGCGTCGGCAAGATCGATCCGCCCGAATCGATGCAGATGCGCATCAACCGCATCTACCGCGGGGCGCAATACCGGCCGGTCACGCACACATACCTGATCCCCGCGCCGTTCGCGGGCACGCTCGGCGGCAAACCGATGCCGGGCGATCAGGTCATGGACTGGGTGAGCGACCTGCTGCACGACTTCGCATGGAAGCCGCAACCGAGGAAGGCATGA
PROTEIN sequence
Length: 1204
MAAEQGRARGKASAATAAATATRVQNALIDGSLCGILERLDEDPAFHRLVSGGMSIADGKDIAPIITVGAPDGLRPAIAAAQAEHTPVVLVVASSREAEDTVNALRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVFRRLTHPSDTNPMFGPIRILVMPVRSLIQPVVKGLGDVDPLVFTQGEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTAPHPVRIEFFGDEIDSIREFHASDQRTYGEGVRTIWATPCRELQLTDAVRDRAKRLIGQIPNADDMLESIANAIPIEGMESLMPALIDDMEPVTGMLDRHAVIMLADSEKLRRAADDLSKTANEFLAASWHVAAAGHGAGAPISFDQASFLDYEETINSLAYSSHDVWNLTSFGVDASRPNHVQLAAGNPGEYRGDETKAAAGIEGLIDAGYQVTVTAAAQGTLARLKRAINETGIASFDVIRSQAIDGFIDTAAKTALLTERDLTGRSSAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDLISKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIAEDLVKLYSARQRTKGFAFSPDTPWQKELEDAFPYQETTDQLTTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHHETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEQYKEPERTEPVAVTIDLPIEASIPVDYIDSDKLRLEAYRKLAASRTDEDLKELADELTDRYGKLPEEFETLFGVARLRMKARELGISEIVAQGKNVRVGKIDPPESMQMRINRIYRGAQYRPVTHTYLIPAPFAGTLGGKPMPGDQVMDWVSDLLHDFAWKPQPRKA*