ggKbase home page

71_003_scaffold_20

Search features with annotation key words

Displaying items 61-90 of 103 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_20_61
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

76442..80473
DNA (4032bp) protein (1344aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA-directed RNA polymerase subunit beta' n=5 Tax=Bifidobacterium bifidum RepID=E3ELV2_BIFBS
rpoC; DNA-directed RNA polymerase subunit beta'
71_003_scaffold_20_62
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80728..81273)
DNA (546bp) protein (182aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V840_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16033.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_20_63
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81288..81884)
DNA (597bp) protein (199aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HU02_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50988.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_20_64
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81906..82799)
DNA (894bp) protein (298aa)
pp2c; protein phosphatase 2C (EC:3.1.3.16)
Pp2c Protein phosphatase 2C n=2 Tax=Bifidobacterium bifidum RepID=E4NZV2_BIFBP
Protein phosphatase 2C {ECO:0000313|EMBL:EKF14842.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_20_65
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(82796..85564)
DNA (2769bp) protein (923aa)
Conserved hypothetical membrane spanning protein containing transglutaminase domain n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELV6_BIFBS
Conserved hypothetical membrane spanning protein containing transglutaminase domain {ECO:0000313|EMBL:ADO52652.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
hypothetical protein
71_003_scaffold_20_66
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85561..86880)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HAC8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50991.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
71_003_scaffold_20_67
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(86891..88582)
DNA (1692bp) protein (564aa)
hypothetical protein; K03924 MoxR-like ATPase [EC:3.6.3.-]
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GH44_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23750.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_68
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(88647..94625)
DNA (5979bp) protein (1993aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M2J1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16216.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
fibronectin type III
71_003_scaffold_20_69
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94704..96122)
DNA (1419bp) protein (473aa)
Protein kinase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I7V9_BIFBI
protein kinase
Protein kinase {ECO:0000313|EMBL:EKE50994.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_20_70
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

96364..100647
DNA (4284bp) protein (1428aa)
ATP-dependent DNA helicase UvrD n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976629
ATP-dependent DNA helicase, UvrD/REP family
ATP-dependent DNA helicase, UvrD/REP family {ECO:0000313|EMBL:ADO52657.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_20_71
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

100644..104849
DNA (4206bp) protein (1402aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
ATP-dependent DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
UvrD/REP helicase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V849_BIFBI
71_003_scaffold_20_72
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

104986..105852
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZW7_BIFBP
hypothetical protein
GNAT family acetyltransferase {ECO:0000313|EMBL:EKE50997.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_20_73
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

105849..107267
DNA (1419bp) protein (473aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZW8_BIFBP
hypothetical protein
Putative transport protein {ECO:0000313|EMBL:AFL04003.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_20_74
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(107170..107553)
DNA (384bp) protein (128aa)
Oligopeptide/dipeptide transporter, C-terminal domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V852_BIFBI
Oligopeptide/dipeptide transporter, C-terminal domain protein {ECO:0000313|EMBL:EFR49794.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
oligopeptide ABC transporter ATP-binding protein
71_003_scaffold_20_75
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(107499..107747)
DNA (249bp) protein (83aa)
adenine DNA methyltransferase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976753
Uncharacterized protein {ECO:0000313|EMBL:KFI42511.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative DNA modification methyl transferase
71_003_scaffold_20_76
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(107920..108099)
DNA (180bp) protein (60aa)
DNA-damage-inducible protein J n=8 Tax=Bifidobacterium RepID=I3WGJ2_BIFBI
RelB antitoxin domain; K07473 DNA-damage-inducible protein J
DNA-damage-inducible protein J {ECO:0000313|EMBL:EKF16209.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_20_77
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(108152..108499)
DNA (348bp) protein (116aa)
Transposase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGJ3_BIFBI
transposase
Transposase {ECO:0000313|EMBL:AFL04006.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_20_78
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

108726..109478
DNA (753bp) protein (251aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=Bifidobacterium bifidum RepID=E4V856_BIFBI
71_003_scaffold_20_79
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

109642..110532
DNA (891bp) protein (297aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
4-hydroxy-tetrahydrodipicolinate synthase n=5 Tax=Bifidobacterium RepID=I3WGJ5_BIFBI
71_003_scaffold_20_80
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

110706..112547
DNA (1842bp) protein (614aa)
Metal-dependent hydrolase n=7 Tax=Bifidobacterium bifidum RepID=E4NZX4_BIFBP
Metal-dependent hydrolase {ECO:0000313|EMBL:KFI42515.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ribonuclease J
71_003_scaffold_20_81
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

112713..115325
DNA (2613bp) protein (871aa)
pepN; Membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2]
Membrane alanyl aminopeptidase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BV67_BIFBI
Aminopeptidase {ECO:0000313|EMBL:BAQ97637.1}; Membrane alanyl aminopeptidase {ECO:0000313|EMBL:ERI82089.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_20_82
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

115865..117529
DNA (1665bp) protein (555aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GE08_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23693.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_20_83
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

117809..119290
DNA (1482bp) protein (494aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Phosphoglucosamine mutase n=8 Tax=Bifidobacterium RepID=E3ELX4_BIFBS
71_003_scaffold_20_84
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

119332..119985
DNA (654bp) protein (218aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=2 Tax=Bifidobacterium RepID=K2M0I9_BIFBI
71_003_scaffold_20_85
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(120110..121531)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HBX5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23682.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_20_86
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

121619..122206
DNA (588bp) protein (196aa)
DNA mismatch endonuclease vsr n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GR04_9BIFI
DNA mismatch endonuclease vsr {ECO:0000313|EMBL:CDB23681.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
vsr; DNA mismatch endonuclease vsr
71_003_scaffold_20_87
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

122391..123587
DNA (1197bp) protein (399aa)
aspC; aspartate amino transferase (EC:2.6.1.1)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HAE5_BIFBI
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:CDB23680.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_88
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

124171..124413
DNA (243bp) protein (81aa)
Ppx/GppA phosphatase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M0H9_BIFBI
gppA; exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:CDB23677.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_89
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(124466..125215)
DNA (750bp) protein (250aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=U2CDK9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42524.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_20_90
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

125431..126240
DNA (810bp) protein (270aa)
Dinucleotide-utilizing enzyme n=4 Tax=Bifidobacterium RepID=E3ELY1_BIFBS
thiF; ThiF protein
ThiF protein {ECO:0000313|EMBL:CDB23671.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 61-90 of 103 in total

View Taxonomy